Literature DB >> 20066103

A structural guide to proteins of the NF-kappaB signaling module.

Tom Huxford1, Gourisankar Ghosh.   

Abstract

The prosurvival transcription factor NF-kappaB specifically binds promoter DNA to activate target gene expression. NF-kappaB is regulated through interactions with IkappaB inhibitor proteins. Active proteolysis of these IkappaB proteins is, in turn, under the control of the IkappaB kinase complex (IKK). Together, these three molecules form the NF-kappaB signaling module. Studies aimed at characterizing the molecular mechanisms of NF-kappaB, IkappaB, and IKK in terms of their three-dimensional structures have lead to a greater understanding of this vital transcription factor system.

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Year:  2009        PMID: 20066103      PMCID: PMC2773632          DOI: 10.1101/cshperspect.a000075

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  115 in total

Review 1.  Topological characteristics of helical repeat proteins.

Authors:  M R Groves; D Barford
Journal:  Curr Opin Struct Biol       Date:  1999-06       Impact factor: 6.809

Review 2.  The ankyrin repeat: a diversity of interactions on a common structural framework.

Authors:  S G Sedgwick; S J Smerdon
Journal:  Trends Biochem Sci       Date:  1999-08       Impact factor: 13.807

3.  Structure of the specificity domain of the Dorsal homologue Gambif1 bound to DNA.

Authors:  P Cramer; A Varrot; C Barillas-Mury; F C Kafatos; C W Müller
Journal:  Structure       Date:  1999-07-15       Impact factor: 5.006

4.  Embryonic lethality, liver degeneration, and impaired NF-kappa B activation in IKK-beta-deficient mice.

Authors:  M Tanaka; M E Fuentes; K Yamaguchi; M H Durnin; S A Dalrymple; K L Hardy; D V Goeddel
Journal:  Immunity       Date:  1999-04       Impact factor: 31.745

5.  IkappaB kinase-beta: NF-kappaB activation and complex formation with IkappaB kinase-alpha and NIK.

Authors:  J D Woronicz; X Gao; Z Cao; M Rothe; D V Goeddel
Journal:  Science       Date:  1997-10-31       Impact factor: 47.728

6.  Structure of the human NF-kappaB p52 homodimer-DNA complex at 2.1 A resolution.

Authors:  P Cramer; C J Larson; G L Verdine; C W Müller
Journal:  EMBO J       Date:  1997-12-01       Impact factor: 11.598

7.  The role of DNA in the mechanism of NFkappaB dimer formation: crystal structures of the dimerization domains of the p50 and p65 subunits.

Authors:  D B Huang; T Huxford; Y Q Chen; G Ghosh
Journal:  Structure       Date:  1997-11-15       Impact factor: 5.006

8.  Cloning and functional characterization of mouse IkappaBepsilon.

Authors:  S Simeonidis; S Liang; G Chen; D Thanos
Journal:  Proc Natl Acad Sci U S A       Date:  1997-12-23       Impact factor: 11.205

9.  A novel DNA recognition mode by the NF-kappa B p65 homodimer.

Authors:  Y Q Chen; S Ghosh; G Ghosh
Journal:  Nat Struct Biol       Date:  1998-01

10.  The IKKbeta subunit of IkappaB kinase (IKK) is essential for nuclear factor kappaB activation and prevention of apoptosis.

Authors:  Z W Li; W Chu; Y Hu; M Delhase; T Deerinck; M Ellisman; R Johnson; M Karin
Journal:  J Exp Med       Date:  1999-06-07       Impact factor: 14.307

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  40 in total

1.  Ankyrin-Like Protein AnkB Interacts with CatB, Affects Catalase Activity, and Enhances Resistance of Xanthomonas oryzae pv. oryzae and Xanthomonas oryzae pv. oryzicola to Phenazine-1-Carboxylic Acid.

Authors:  Xiayan Pan; Shu Xu; Jian Wu; Yabing Duan; Zhitian Zheng; Jianxin Wang; Xiushi Song; Mingguo Zhou
Journal:  Appl Environ Microbiol       Date:  2018-01-31       Impact factor: 4.792

2.  Neonatal High Bone Mass With First Mutation of the NF-κB Complex: Heterozygous De Novo Missense (p.Asp512Ser) RELA (Rela/p65).

Authors:  Anja L Frederiksen; Martin J Larsen; Klaus Brusgaard; Deborah V Novack; Peter Juel Thiis Knudsen; Henrik Daa Schrøder; Weimin Qiu; Christina Eckhardt; William H McAlister; Moustapha Kassem; Steven Mumm; Morten Frost; Michael P Whyte
Journal:  J Bone Miner Res       Date:  2015-08-06       Impact factor: 6.741

3.  Targeting NF-κB p65 with a Helenalin Inspired Bis-electrophile.

Authors:  John C Widen; Aaron M Kempema; Peter W Villalta; Daniel A Harki
Journal:  ACS Chem Biol       Date:  2016-11-28       Impact factor: 5.100

4.  The Nuclear Protein IκBζ Forms a Transcriptionally Active Complex with Nuclear Factor-κB (NF-κB) p50 and the Lcn2 Promoter via the N- and C-terminal Ankyrin Repeat Motifs.

Authors:  Akira Kohda; Soh Yamazaki; Hideki Sumimoto
Journal:  J Biol Chem       Date:  2016-08-03       Impact factor: 5.157

Review 5.  Genome reading by the NF-κB transcription factors.

Authors:  Maria Carmen Mulero; Vivien Ya-Fan Wang; Tom Huxford; Gourisankar Ghosh
Journal:  Nucleic Acids Res       Date:  2019-11-04       Impact factor: 16.971

6.  A novel small molecule, HK-156, inhibits lipopolysaccharide-induced activation of NF-κB signaling and improves survival in mouse models of sepsis.

Authors:  Jian-Ping Fang; Yang Liu; Jie Li; Wen-Feng Liao; You-Hong Hu; Kan Ding
Journal:  Acta Pharmacol Sin       Date:  2012-06-11       Impact factor: 6.150

Review 7.  Structural studies of NF-κB signaling.

Authors:  Chao Zheng; Qian Yin; Hao Wu
Journal:  Cell Res       Date:  2010-12-07       Impact factor: 25.617

Review 8.  Molecular basis of NF-κB signaling.

Authors:  Johanna Napetschnig; Hao Wu
Journal:  Annu Rev Biophys       Date:  2013-03-11       Impact factor: 12.981

9.  Intrinsic protein disorder could be overlooked in cocrystallization conditions: An SRCD case study.

Authors:  Eszter Németh; Ria K Balogh; Katalin Borsos; Anikó Czene; Peter W Thulstrup; Béla Gyurcsik
Journal:  Protein Sci       Date:  2016-08-23       Impact factor: 6.725

10.  Structurally plastic NEMO and oligomerization prone IKK2 subunits define the behavior of human IKK2:NEMO complexes in solution.

Authors:  Myung Soo Ko; Tapan Biswas; Maria Carmen Mulero; Andrey A Bobkov; Gourisankar Ghosh; Tom Huxford
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2020-08-25       Impact factor: 3.036

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