Literature DB >> 20066093

Specification of DNA binding activity of NF-kappaB proteins.

Fengyi Wan1, Michael J Lenardo.   

Abstract

Nuclear factor-kappaB (NF-kappaB) is a pleiotropic mediator of inducible and specific gene regulation involving diverse biological activities including immune response, inflammation, cell proliferation, and death. The fine-tuning of the NF-kappaB DNA binding activity is essential for its fundamental function as a transcription factor. An increasing body of literature illustrates that this process can be elegantly and specifically controlled at multiple levels by different protein subsets. In particular, the recent identification of a non-Rel subunit of NF-kappaB itself provides a new way to understand the selective high-affinity DNA binding specificity of NF-kappaB conferred by a synergistic interaction within the whole complex. Here, we review the mechanism of the specification of DNA binding activity of NF-kappaB complexes, one of the most important aspects of NF-kappaB transcriptional control.

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Year:  2009        PMID: 20066093      PMCID: PMC2773628          DOI: 10.1101/cshperspect.a000067

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  99 in total

1.  One nucleotide in a kappaB site can determine cofactor specificity for NF-kappaB dimers.

Authors:  Thomas H Leung; Alexander Hoffmann; David Baltimore
Journal:  Cell       Date:  2004-08-20       Impact factor: 41.582

Review 2.  Signaling to NF-kappaB.

Authors:  Matthew S Hayden; Sankar Ghosh
Journal:  Genes Dev       Date:  2004-09-15       Impact factor: 11.361

3.  GSK3-mediated BCL-3 phosphorylation modulates its degradation and its oncogenicity.

Authors:  Patrick Viatour; Emmanuel Dejardin; Michael Warnier; Florence Lair; Estefania Claudio; Fabrice Bureau; Jean-Christophe Marine; Marie-Paule Merville; Ulrich Maurer; Douglas Green; Jacques Piette; Ulrich Siebenlist; Vincent Bours; Alain Chariot
Journal:  Mol Cell       Date:  2004-10-08       Impact factor: 17.970

Review 4.  NF-kappa B: a pleiotropic mediator of inducible and tissue-specific gene control.

Authors:  M J Lenardo; D Baltimore
Journal:  Cell       Date:  1989-07-28       Impact factor: 41.582

5.  Inducibility of kappa immunoglobulin enhancer-binding protein Nf-kappa B by a posttranslational mechanism.

Authors:  R Sen; D Baltimore
Journal:  Cell       Date:  1986-12-26       Impact factor: 41.582

6.  Protein-binding sites in Ig gene enhancers determine transcriptional activity and inducibility.

Authors:  M Lenardo; J W Pierce; D Baltimore
Journal:  Science       Date:  1987-06-19       Impact factor: 47.728

7.  The involvement of NF-kappa B in beta-interferon gene regulation reveals its role as widely inducible mediator of signal transduction.

Authors:  M J Lenardo; C M Fan; T Maniatis; D Baltimore
Journal:  Cell       Date:  1989-04-21       Impact factor: 41.582

8.  Induction of p100 processing by NF-kappaB-inducing kinase involves docking IkappaB kinase alpha (IKKalpha) to p100 and IKKalpha-mediated phosphorylation.

Authors:  Gutian Xiao; Abraham Fong; Shao-Cong Sun
Journal:  J Biol Chem       Date:  2004-05-11       Impact factor: 5.157

9.  I kappa B: a specific inhibitor of the NF-kappa B transcription factor.

Authors:  P A Baeuerle; D Baltimore
Journal:  Science       Date:  1988-10-28       Impact factor: 47.728

10.  NF-kappa B contacts DNA by a heterodimer of the p50 and p65 subunit.

Authors:  M B Urban; R Schreck; P A Baeuerle
Journal:  EMBO J       Date:  1991-07       Impact factor: 11.598

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  63 in total

1.  NF-κB negatively impacts the myogenic potential of muscle-derived stem cells.

Authors:  Aiping Lu; Jonathan D Proto; Lulin Guo; Ying Tang; Mitra Lavasani; Jeremy S Tilstra; Laura J Niedernhofer; Bing Wang; Denis C Guttridge; Paul D Robbins; Johnny Huard
Journal:  Mol Ther       Date:  2011-12-13       Impact factor: 11.454

Review 2.  Transcriptional and chromatin regulation in interferon and innate antiviral gene expression.

Authors:  Nancy Au-Yeung; Curt M Horvath
Journal:  Cytokine Growth Factor Rev       Date:  2018-10-22       Impact factor: 7.638

3.  Regulation and function of nuclear IκBα in inflammation and cancer.

Authors:  Ivana Vancurova; Ales Vancura
Journal:  Am J Clin Exp Immunol       Date:  2012-05-25

Review 4.  NFκB function and regulation in cutaneous T-cell lymphoma.

Authors:  Tzu-Pei Chang; Ivana Vancurova
Journal:  Am J Cancer Res       Date:  2013-11-01       Impact factor: 6.166

5.  Disruption of IkappaB kinase (IKK)-mediated RelA serine 536 phosphorylation sensitizes human multiple myeloma cells to histone deacetylase (HDAC) inhibitors.

Authors:  Yun Dai; Shuang Chen; Li Wang; Xin-Yan Pei; Vanessa L Funk; Lora B Kramer; Paul Dent; Steven Grant
Journal:  J Biol Chem       Date:  2011-08-04       Impact factor: 5.157

6.  Effect of in vivo post-translational modifications of the HMGB1 protein upon binding to platinated DNA: a molecular simulation study.

Authors:  Wenping Lyu Lv; Fabio Arnesano; Paolo Carloni; Giovanni Natile; Giulia Rossetti
Journal:  Nucleic Acids Res       Date:  2018-12-14       Impact factor: 16.971

7.  Genomic analysis reveals a novel nuclear factor-κB (NF-κB)-binding site in Alu-repetitive elements.

Authors:  Athina Antonaki; Constantinos Demetriades; Alexander Polyzos; Aggelos Banos; Giannis Vatsellas; Matthieu D Lavigne; Effie Apostolou; Eva Mantouvalou; Deppie Papadopoulou; George Mosialos; Dimitris Thanos
Journal:  J Biol Chem       Date:  2011-09-05       Impact factor: 5.157

8.  Synthetic Essentiality of Metabolic Regulator PDHK1 in PTEN-Deficient Cells and Cancers.

Authors:  Nilanjana Chatterjee; Evangelos Pazarentzos; Manasi K Mayekar; Philippe Gui; David V Allegakoen; Gorjan Hrustanovic; Victor Olivas; Luping Lin; Erik Verschueren; Jeffrey R Johnson; Matan Hofree; Jenny J Yan; Billy W Newton; John V Dollen; Charles H Earnshaw; Jennifer Flanagan; Elton Chan; Saurabh Asthana; Trey Ideker; Wei Wu; Junji Suzuki; Benjamin A Barad; Yuriy Kirichok; James S Fraser; William A Weiss; Nevan J Krogan; Asmin Tulpule; Amit J Sabnis; Trever G Bivona
Journal:  Cell Rep       Date:  2019-08-27       Impact factor: 9.423

9.  Identification of an N-terminal truncation of the NF-κB p65 subunit that specifically modulates ribosomal protein S3-dependent NF-κB gene expression.

Authors:  Eric M Wier; Jordan Neighoff; Xin Sun; Kai Fu; Fengyi Wan
Journal:  J Biol Chem       Date:  2012-10-31       Impact factor: 5.157

10.  Retinoic acid and sodium butyrate suppress the cardiac expression of hypertrophic markers and proinflammatory mediators in Npr1 gene-disrupted haplotype mice.

Authors:  Umadevi Subramanian; Prerna Kumar; Indra Mani; David Chen; Isaac Kessler; Ramu Periyasamy; Giri Raghavaraju; Kailash N Pandey
Journal:  Physiol Genomics       Date:  2016-05-06       Impact factor: 3.107

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