Literature DB >> 20064738

Grass genome organization and evolution.

Katrien M Devos1.   

Abstract

The genomes of five species belonging to the grass family have been fully sequenced and provide insight into the structural organization and evolution of grass genomes. Comparative analyses have shown that genes and repeats are organized differently in small genomes compared to large genomes. Small genomes show a clear partitioning between gene-rich euchromatic and gene-poor pericentromeric regions. This is far less the case in larger genomes because many repeats are also interspersed between single genes or small gene islands. This organizational pattern may enhance erosion of colinearity because of the inherent mutagenic effects of transposable elements. Factors contributing to genome diversification, which is not constant in either space or time, are rapid turnover of repeats, chromosomal rearrangements, gene loss or differentiation following gene duplication and potentially the creation of new genes from transposable element-acquired gene fragments.

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Substances:

Year:  2010        PMID: 20064738     DOI: 10.1016/j.pbi.2009.12.005

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  31 in total

1.  Systematic analysis of plant-specific B3 domain-containing proteins based on the genome resources of 11 sequenced species.

Authors:  Yijun Wang; Dexiang Deng; Rong Zhang; Suxin Wang; Yunlong Bian; Zhitong Yin
Journal:  Mol Biol Rep       Date:  2012-05       Impact factor: 2.316

Review 2.  Emerging knowledge from genome sequencing of crop species.

Authors:  Delfina Barabaschi; Davide Guerra; Katia Lacrima; Paolo Laino; Vania Michelotti; Simona Urso; Giampiero Valè; Luigi Cattivelli
Journal:  Mol Biotechnol       Date:  2012-03       Impact factor: 2.695

3.  LTR-retrotransposons and inter-retrotransposon amplified polymorphism (IRAP) analysis in Lilium species.

Authors:  Sung-Il Lee; Jong-Hwa Kim; Kyong-Cheul Park; Nam-Soo Kim
Journal:  Genetica       Date:  2015-03-19       Impact factor: 1.082

4.  Tandem repeats on an eco-geographical scale: outcomes from the genome of Aegilops speltoides.

Authors:  Olga Raskina; Leonid Brodsky; Alexander Belyayev
Journal:  Chromosome Res       Date:  2011-06-08       Impact factor: 5.239

5.  Differential regulation of genes by retrotransposons in rice promoters.

Authors:  Surendar Reddy Dhadi; Zijun Xu; Rafi Shaik; Kyle Driscoll; Wusirika Ramakrishna
Journal:  Plant Mol Biol       Date:  2015-02-20       Impact factor: 4.076

6.  Synteny between Brachypodium distachyon and Hordeum vulgare as revealed by FISH.

Authors:  Lu Ma; Giang T H Vu; Veit Schubert; Koichi Watanabe; Nils Stein; Andreas Houben; Ingo Schubert
Journal:  Chromosome Res       Date:  2010-11-23       Impact factor: 5.239

7.  Duplicate maize Wrinkled1 transcription factors activate target genes involved in seed oil biosynthesis.

Authors:  Benjamin Pouvreau; Sébastien Baud; Vanessa Vernoud; Valérie Morin; Cyrille Py; Ghislaine Gendrot; Jean-Philippe Pichon; Jacques Rouster; Wyatt Paul; Peter M Rogowsky
Journal:  Plant Physiol       Date:  2011-04-06       Impact factor: 8.340

8.  A radiation hybrid map of chromosome 1D reveals synteny conservation at a wheat speciation locus.

Authors:  Monika K Michalak de Jimenez; Filippo M Bassi; Farhad Ghavami; Kristin Simons; Rissa Dizon; Raed I Seetan; Loai M Alnemer; Anne M Denton; Münevver Doğramacı; Hana Šimková; Jaroslav Doležel; Kiran Seth; Ming-Cheng Luo; Jan Dvorak; Yong Qiang Gu; Shahryar F Kianian
Journal:  Funct Integr Genomics       Date:  2013-03-12       Impact factor: 3.410

9.  Comparative analysis of syntenic genes in grass genomes reveals accelerated rates of gene structure and coding sequence evolution in polyploid wheat.

Authors:  Eduard D Akhunov; Sunish Sehgal; Hanquan Liang; Shichen Wang; Alina R Akhunova; Gaganpreet Kaur; Wanlong Li; Kerrie L Forrest; Deven See; Hana Simková; Yaqin Ma; Matthew J Hayden; Mingcheng Luo; Justin D Faris; Jaroslav Dolezel; Bikram S Gill
Journal:  Plant Physiol       Date:  2012-11-01       Impact factor: 8.340

10.  Genome-wide prediction of nucleosome occupancy in maize reveals plant chromatin structural features at genes and other elements at multiple scales.

Authors:  Justin A Fincher; Daniel L Vera; Diana D Hughes; Karen M McGinnis; Jonathan H Dennis; Hank W Bass
Journal:  Plant Physiol       Date:  2013-04-09       Impact factor: 8.340

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