Literature DB >> 20062039

Enriching quantitative proteomics with SI(N).

Mihaela E Sardiu, Michael P Washburn.   

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Year:  2010        PMID： 20062039     DOI： 10.1038/nbt0110-40

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  9 in total

1.  Intensity-based protein identification by machine learning from a library of tandem mass spectra.

Authors:  Joshua E Elias; Francis D Gibbons; Oliver D King; Frederick P Roth; Steven P Gygi
Journal:  Nat Biotechnol       Date:  2004-01-18       Impact factor: 54.908

2.  Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae.

Authors:  Boris Zybailov; Amber L Mosley; Mihaela E Sardiu; Michael K Coleman; Laurence Florens; Michael P Washburn
Journal:  J Proteome Res       Date:  2006-09       Impact factor: 4.466

3.  Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra.

Authors:  John D Venable; Meng-Qiu Dong; James Wohlschlegel; Andrew Dillin; John R Yates
Journal:  Nat Methods       Date:  2004-09-29       Impact factor: 28.547

4.  Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics.

Authors:  Mihaela E Sardiu; Yong Cai; Jingji Jin; Selene K Swanson; Ronald C Conaway; Joan W Conaway; Laurence Florens; Michael P Washburn
Journal:  Proc Natl Acad Sci U S A       Date:  2008-01-24       Impact factor: 11.205

Review 5.  Quantitative strategies to fuel the merger of discovery and hypothesis-driven shotgun proteomics.

Authors:  Kelli G Kline; Greg L Finney; Christine C Wu
Journal:  Brief Funct Genomic Proteomic       Date:  2009-03

6.  Precision proteomics: the case for high resolution and high mass accuracy.

Authors:  Matthias Mann; Neil L Kelleher
Journal:  Proc Natl Acad Sci U S A       Date:  2008-09-25       Impact factor: 11.205

7.  Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Authors:  Peng Lu; Christine Vogel; Rong Wang; Xin Yao; Edward M Marcotte
Journal:  Nat Biotechnol       Date:  2006-12-24       Impact factor: 54.908

8.  Defining the human deubiquitinating enzyme interaction landscape.

Authors:  Mathew E Sowa; Eric J Bennett; Steven P Gygi; J Wade Harper
Journal:  Cell       Date:  2009-07-16       Impact factor: 41.582

9.  Label-free, normalized quantification of complex mass spectrometry data for proteomic analysis.

Authors:  Noelle M Griffin; Jingyi Yu; Fred Long; Phil Oh; Sabrina Shore; Yan Li; Jim A Koziol; Jan E Schnitzer
Journal:  Nat Biotechnol       Date:  2009-12-13       Impact factor: 54.908
  9 in total
  7 in total

Review 1.  Profiling of protein interaction networks of protein complexes using affinity purification and quantitative mass spectrometry.

Authors:  Robyn M Kaake; Xiaorong Wang; Lan Huang
Journal:  Mol Cell Proteomics       Date:  2010-05-05       Impact factor: 5.911

2.  Glycoproteomic analysis of glioblastoma stem cell differentiation.

Authors:  Jintang He; Yashu Liu; Thant S Zhu; Xiaolei Xie; Mark A Costello; Caroline E Talsma; Callie G Flack; Jessica G Crowley; Francesco Dimeco; Angelo L Vescovi; Xing Fan; David M Lubman
Journal:  J Proteome Res       Date:  2010-12-16       Impact factor: 4.466

3.  Identification of glycoprotein markers for pancreatic cancer CD24+CD44+ stem-like cells using nano-LC-MS/MS and tissue microarray.

Authors:  Jianhui Zhu; Jintang He; Yashu Liu; Diane M Simeone; David M Lubman
Journal:  J Proteome Res       Date:  2012-02-28       Impact factor: 4.466

Review 4.  Current challenges in software solutions for mass spectrometry-based quantitative proteomics.

Authors:  Salvatore Cappadona; Peter R Baker; Pedro R Cutillas; Albert J R Heck; Bas van Breukelen
Journal:  Amino Acids       Date:  2012-07-22       Impact factor: 3.520

5.  Allergic asthma is distinguished by sensitivity of allergen-specific CD4+ T cells and airway structural cells to type 2 inflammation.

Authors:  Josalyn L Cho; Morris F Ling; David C Adams; Lucas Faustino; Sabina A Islam; Roshi Afshar; Jason W Griffith; Robert S Harris; Aylwin Ng; Giorgia Radicioni; Amina A Ford; Andre K Han; Ramnik Xavier; William W Kwok; Richard Boucher; James J Moon; Daniel L Hamilos; Mehmet Kesimer; Melissa J Suter; Benjamin D Medoff; Andrew D Luster
Journal:  Sci Transl Med       Date:  2016-10-05       Impact factor: 19.319

6.  Aging-related anatomical and biochemical changes in lymphatic collectors impair lymph transport, fluid homeostasis, and pathogen clearance.

Authors:  Valerio Zolla; Irina Tsoy Nizamutdinova; Brian Scharf; Cristina C Clement; Daisuke Maejima; Tony Akl; Takashi Nagai; Paola Luciani; Jean-Christophe Leroux; Cornelia Halin; Sabriya Stukes; Sangeeta Tiwari; Arturo Casadevall; William R Jacobs; David Entenberg; David C Zawieja; John Condeelis; David R Fooksman; Anatoliy A Gashev; Laura Santambrogio
Journal:  Aging Cell       Date:  2015-05-15       Impact factor: 9.304

7.  Profiling plasma extracellular vesicle by pluronic block-copolymer based enrichment method unveils features associated with breast cancer aggression, metastasis and invasion.

Authors:  Zhenyu Zhong; Matthew Rosenow; Nick Xiao; David Spetzler
Journal:  J Extracell Vesicles       Date:  2018-04-05
  7 in total

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