Literature DB >> 20058248

ms_lims, a simple yet powerful open source laboratory information management system for MS-driven proteomics.

Kenny Helsens1, Niklaas Colaert, Harald Barsnes, Thilo Muth, Kristian Flikka, An Staes, Evy Timmerman, Steffi Wortelkamp, Albert Sickmann, Joël Vandekerckhove, Kris Gevaert, Lennart Martens.   

Abstract

MS-based proteomics produces large amounts of mass spectra that require processing, identification and possibly quantification before interpretation can be undertaken. High-throughput studies require automation of these various steps, and management of the data in association with the results obtained. We here present ms_lims (http://genesis.UGent.be/ms_lims), a freely available, open-source system based on a central database to automate data management and processing in MS-driven proteomics analyses.

Mesh：

Year:  2010        PMID： 20058248     DOI： 10.1002/pmic.200900409

Source DB:  PubMed          Journal:  Proteomics        ISSN： 1615-9853            Impact factor:   3.984


  38 in total

1.  Cells lacking β-actin are genetically reprogrammed and maintain conditional migratory capacity.

Authors:  Davina Tondeleir; Anja Lambrechts; Matthias Müller; Veronique Jonckheere; Thierry Doll; Drieke Vandamme; Karima Bakkali; Davy Waterschoot; Marianne Lemaistre; Olivier Debeir; Christine Decaestecker; Boris Hinz; An Staes; Evy Timmerman; Niklaas Colaert; Kris Gevaert; Joël Vandekerckhove; Christophe Ampe
Journal:  Mol Cell Proteomics       Date:  2012-03-22       Impact factor: 5.911

2.  The neural cell adhesion molecules L1 and CHL1 are cleaved by BACE1 protease in vivo.

Authors:  Lujia Zhou; Soraia Barão; Mathias Laga; Katrijn Bockstael; Marianne Borgers; Harry Gijsen; Wim Annaert; Diederik Moechars; Marc Mercken; Kris Gevaert; Kris Gevaer; Bart De Strooper
Journal:  J Biol Chem       Date:  2012-06-12       Impact factor: 5.157

3.  Omics Assisted N-terminal Proteoform and Protein Expression Profiling On Methionine Aminopeptidase 1 (MetAP1) Deletion.

Authors:  Veronique Jonckheere; Daria Fijałkowska; Petra Van Damme
Journal:  Mol Cell Proteomics       Date:  2018-01-09       Impact factor: 5.911

4.  MS2PIP: a tool for MS/MS peak intensity prediction.

Authors:  Sven Degroeve; Lennart Martens
Journal:  Bioinformatics       Date:  2013-09-27       Impact factor: 6.937

5.  N-terminomics identifies Prli42 as a membrane miniprotein conserved in Firmicutes and critical for stressosome activation in Listeria monocytogenes.

Authors:  Francis Impens; Nathalie Rolhion; Lilliana Radoshevich; Christophe Bécavin; Mélodie Duval; Jeffrey Mellin; Francisco García Del Portillo; M Graciela Pucciarelli; Allison H Williams; Pascale Cossart
Journal:  Nat Microbiol       Date:  2017-02-13       Impact factor: 17.745

6.  A Saccharomyces cerevisiae model reveals in vivo functional impairment of the Ogden syndrome N-terminal acetyltransferase NAA10 Ser37Pro mutant.

Authors:  Petra Van Damme; Svein I Støve; Nina Glomnes; Kris Gevaert; Thomas Arnesen
Journal:  Mol Cell Proteomics       Date:  2014-01-09       Impact factor: 5.911

7.  A Role for Human N-alpha Acetyltransferase 30 (Naa30) in Maintaining Mitochondrial Integrity.

Authors:  Petra Van Damme; Thomas V Kalvik; Kristian K Starheim; Veronique Jonckheere; Line M Myklebust; Gerben Menschaert; Jan Erik Varhaug; Kris Gevaert; Thomas Arnesen
Journal:  Mol Cell Proteomics       Date:  2016-09-30       Impact factor: 5.911

Review 8.  Biomarkers in autism spectrum disorder: the old and the new.

Authors:  Barbara Ruggeri; Ugis Sarkans; Gunter Schumann; Antonio M Persico
Journal:  Psychopharmacology (Berl)       Date:  2013-10-06       Impact factor: 4.530

Review 9.  Proteomics data repositories: providing a safe haven for your data and acting as a springboard for further research.

Authors:  Juan Antonio Vizcaíno; Joseph M Foster; Lennart Martens
Journal:  J Proteomics       Date:  2010-07-06       Impact factor: 4.044

10.  The Proteomics Identifications database: 2010 update.

Authors:  Juan Antonio Vizcaíno; Richard Côté; Florian Reisinger; Harald Barsnes; Joseph M Foster; Jonathan Rameseder; Henning Hermjakob; Lennart Martens
Journal:  Nucleic Acids Res       Date:  2009-11-11       Impact factor: 16.971
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