Literature DB >> 20057081

Crystallization and preliminary X-ray characterization of the Skp1-Fbg3 complex.

Taichi Kumanomidou1, Tomomi Nakagawa, Tsunehiro Mizushima, Atsuo Suzuki, Fuminori Tokunaga, Kazuhiro Iwai, Yukiko Yoshida, Keiji Tanaka, Takashi Yamane.   

Abstract

F-box proteins are the substrate-recognition components of Skp1-Cullin1-F-box protein-Rbx1 (SCF) ubiquitin ligase complexes. Fbs1, an F-box protein, binds specifically to proteins modified with high-mannose oligosaccharides. Fbg3, another F-box protein, has 51% sequence identity to Fbs1. Although the residues that are necessary for binding to oligosaccharides are conserved between Fbs1 and Fbg3, Fbg3 does not bind glycoproteins. Skp1 and Fbg3 were co-expressed in Escherichia coli and their complex was purified to homogeneity and crystallized. Microseeding combined with the sandwiched hanging-drop technique improved the quality of the resulting crystals. The plate-shaped crystals belonged to space group P2(1)2(1)2(1), with unit-cell parameters a = 34.1, b = 76.6, c = 193.9 A and one molecule per asymmetric unit.

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Year:  2009        PMID: 20057081      PMCID: PMC2805547          DOI: 10.1107/S1744309109050581

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  11 in total

Review 1.  SCF and Cullin/Ring H2-based ubiquitin ligases.

Authors:  R J Deshaies
Journal:  Annu Rev Cell Dev Biol       Date:  1999       Impact factor: 13.827

Review 2.  Mechanisms underlying ubiquitination.

Authors:  C M Pickart
Journal:  Annu Rev Biochem       Date:  2001       Impact factor: 23.643

3.  Systematic analysis and nomenclature of mammalian F-box proteins.

Authors:  Jianping Jin; Timothy Cardozo; Ruth C Lovering; Stephen J Elledge; Michele Pagano; J Wade Harper
Journal:  Genes Dev       Date:  2004-11-01       Impact factor: 11.361

4.  A neural-specific F-box protein Fbs1 functions as a chaperone suppressing glycoprotein aggregation.

Authors:  Yukiko Yoshida; Arisa Murakami; Kazuhiro Iwai; Keiji Tanaka
Journal:  J Biol Chem       Date:  2007-01-10       Impact factor: 5.157

Review 5.  F-box proteins that contain sugar-binding domains.

Authors:  Yukiko Yoshida
Journal:  Biosci Biotechnol Biochem       Date:  2007-11-07       Impact factor: 2.043

Review 6.  The ubiquitin system.

Authors:  A Hershko; A Ciechanover
Journal:  Annu Rev Biochem       Date:  1998       Impact factor: 23.643

7.  Epidemic self-injury in an adolescent unit.

Authors:  P C Mattews
Journal:  Int J Soc Psychiatry       Date:  1968

8.  Structural basis for the selection of glycosylated substrates by SCF(Fbs1) ubiquitin ligase.

Authors:  Tsunehiro Mizushima; Yukiko Yoshida; Taichi Kumanomidou; Yuko Hasegawa; Atsuo Suzuki; Takashi Yamane; Keiji Tanaka
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-26       Impact factor: 11.205

9.  E3 ubiquitin ligase that recognizes sugar chains.

Authors:  Yukiko Yoshida; Tomoki Chiba; Fuminori Tokunaga; Hiroshi Kawasaki; Kazuhiro Iwai; Toshiaki Suzuki; Yukishige Ito; Koji Matsuoka; Minoru Yoshida; Keiji Tanaka; Tadashi Tai
Journal:  Nature       Date:  2002-07-25       Impact factor: 49.962

10.  Structural basis of sugar-recognizing ubiquitin ligase.

Authors:  Tsunehiro Mizushima; Takeshi Hirao; Yukiko Yoshida; Soo Jae Lee; Tomoki Chiba; Kazuhiro Iwai; Yoshiki Yamaguchi; Koichi Kato; Tomitake Tsukihara; Keiji Tanaka
Journal:  Nat Struct Mol Biol       Date:  2004-02-29       Impact factor: 15.369

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  2 in total

1.  Structural analysis of a function-associated loop mutant of the substrate-recognition domain of Fbs1 ubiquitin ligase.

Authors:  Kazuya Nishio; Yukiko Yoshida; Keiji Tanaka; Tsunehiro Mizushima
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-07-27       Impact factor: 1.056

2.  The Structural Differences between a Glycoprotein Specific F-Box Protein Fbs1 and Its Homologous Protein FBG3.

Authors:  Taichi Kumanomidou; Kazuya Nishio; Kenji Takagi; Tomomi Nakagawa; Atsuo Suzuki; Takashi Yamane; Fuminori Tokunaga; Kazuhiro Iwai; Arisa Murakami; Yukiko Yoshida; Keiji Tanaka; Tsunehiro Mizushima
Journal:  PLoS One       Date:  2015-10-13       Impact factor: 3.240

  2 in total

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