Literature DB >> 20055672

Subcellular dynamics and protein conformation fluctuations measured by Fourier imaging correlation spectroscopy.

Eric N Senning1, Andrew H Marcus.   

Abstract

Novel high signal-to-noise spectroscopic experiments that probe the dynamics of microscopic objects have the potential to reveal complex intracellular biochemical mechanisms, or the slow relaxations of soft matter systems. This article reviews the implementation of Fourier imaging correlation spectroscopy (FICS), a phase-selective approach to fluorescence fluctuation spectroscopy that employs a unique route to elevate signal levels while acquiring detailed information about molecular coordinate trajectories. The review demonstrates the broad applicability of FICS by discussing two recent studies. The dynamics of Saccharomyces cerevisiae yeast mitochondria are characterized with FICS and provide detailed information about the influence of specific cytoskeletal elements on the movement of this organelle. In another set of experiments, polarization-modulated FICS captures conformational dynamics and molecular translational dynamics of the fluorescent protein DsRed, and analyses by four-point correlation and joint distribution functions of the corresponding data reveal statistically meaningful pathways of DsRed switching between different optical conformations.

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Year:  2010        PMID: 20055672      PMCID: PMC4833490          DOI: 10.1146/annurev.physchem.012809.103500

Source DB:  PubMed          Journal:  Annu Rev Phys Chem        ISSN: 0066-426X            Impact factor:   12.703


  33 in total

1.  The structure of the chromophore within DsRed, a red fluorescent protein from coral.

Authors:  L A Gross; G S Baird; R C Hoffman; K K Baldridge; R Y Tsien
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Measurement of the dynamic structure function of fluorescently labeled complex fluids by fourier imaging correlation spectroscopy

Authors: 
Journal:  Phys Rev Lett       Date:  2000-09-25       Impact factor: 9.161

3.  Protein conformational dynamics probed by single-molecule electron transfer.

Authors:  Haw Yang; Guobin Luo; Pallop Karnchanaphanurach; Tai-Man Louie; Ivan Rech; Sergio Cova; Luying Xun; X Sunney Xie
Journal:  Science       Date:  2003-10-10       Impact factor: 47.728

Review 4.  Green and red fluorescent proteins: photo- and thermally induced dynamics probed by site-selective spectroscopy and hole burning.

Authors:  S Bonsma; R Purchase; S Jezowski; J Gallus; F Könz; S Völker
Journal:  Chemphyschem       Date:  2005-05       Impact factor: 3.102

5.  Translational diffusion of fluorescent proteins by molecular fourier imaging correlation spectroscopy.

Authors:  Michael C Fink; Kenneth V Adair; Marina G Guenza; Andrew H Marcus
Journal:  Biophys J       Date:  2006-08-18       Impact factor: 4.033

6.  Probing transcription factor dynamics at the single-molecule level in a living cell.

Authors:  Johan Elf; Gene-Wei Li; X Sunney Xie
Journal:  Science       Date:  2007-05-25       Impact factor: 47.728

Review 7.  Mitochondria and apoptosis.

Authors:  D R Green; J C Reed
Journal:  Science       Date:  1998-08-28       Impact factor: 47.728

8.  Protein mobility in the cytoplasm of Escherichia coli.

Authors:  M B Elowitz; M G Surette; P E Wolf; J B Stock; S Leibler
Journal:  J Bacteriol       Date:  1999-01       Impact factor: 3.490

9.  Coupling of the de novo fatty acid biosynthesis and lipoylation pathways in mammalian mitochondria.

Authors:  Andrzej Witkowski; Anil K Joshi; Stuart Smith
Journal:  J Biol Chem       Date:  2007-03-20       Impact factor: 5.157

10.  Mitochondrial transmission during mating in Saccharomyces cerevisiae is determined by mitochondrial fusion and fission and the intramitochondrial segregation of mitochondrial DNA.

Authors:  J Nunnari; W F Marshall; A Straight; A Murray; J W Sedat; P Walter
Journal:  Mol Biol Cell       Date:  1997-07       Impact factor: 4.138

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  3 in total

1.  Biological physics in México: Review and new challenges.

Authors:  Enrique Hernández-Lemus
Journal:  J Biol Phys       Date:  2011-02-11       Impact factor: 1.365

2.  Using microsecond single-molecule FRET to determine the assembly pathways of T4 ssDNA binding protein onto model DNA replication forks.

Authors:  Carey Phelps; Brett Israels; Davis Jose; Morgan C Marsh; Peter H von Hippel; Andrew H Marcus
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-17       Impact factor: 11.205

3.  Using Multiorder Time-Correlation Functions (TCFs) To Elucidate Biomolecular Reaction Pathways from Microsecond Single-Molecule Fluorescence Experiments.

Authors:  Carey Phelps; Brett Israels; Morgan C Marsh; Peter H von Hippel; Andrew H Marcus
Journal:  J Phys Chem B       Date:  2016-12-19       Impact factor: 2.991

  3 in total

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