Literature DB >> 20055519

A reliable and efficient first principles-based method for predicting pK(a) values. 2. Organic acids.

Shuming Zhang1, Jon Baker, Peter Pulay.   

Abstract

In part 1 of this series, we developed a protocol for the large-scale calculation of pK(a) values in aqueous solutions from first principles calculations, with the goal of striking a compromise between accuracy and computational efficiency. Following previous workers in the field, pK(a) values are calculated from a linear regression fit to deprotonation energies: pK(a)(f) = alpha(f)(E(A)(-) - E(HA)) + beta(f), where f denotes a family of functional groups. In this paper, we derive (alpha(f), beta(f)) values for the acidic functional groups -COOH, -POOH, alcoholic and phenolic -OH, -SH, -NHOH/ horizontal lineNOH, and -NROH, using a data set of 449 experimental pK(a) values. Several groupings of these functional groups were explored; our final recommended method uses five families (10 empirical parameters). Mean absolute deviations between our fits and experiment are 0.4 pK(a) units or less for each with a maximum error range of +/-1.5 pK(a) units. In certain subgroups, such as monocarboxylic acids, considerably better fits (mean absolute deviation approximately 0.20 pK(s) units) were obtained at the cost of more empirical parameters. Almost 70% of pK(a)'s calculated by our protocol lie within +/-0.4 pK(a) units and over 90% within +/-0.8 pK(a) units of the experimental reference value. Our results compare favorably with previous similar models which have greater computational cost.

Entities:  

Year:  2010        PMID: 20055519     DOI: 10.1021/jp9067087

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  6 in total

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Journal:  J Am Chem Soc       Date:  2012-07-16       Impact factor: 15.419

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3.  Aromatic Ring Fluorination Patterns Modulate Inhibitory Potency of Fluorophenylhydroxamates Complexed with Histone Deacetylase 6.

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4.  Multiscale Reactive Molecular Dynamics for Absolute pKa Predictions and Amino Acid Deprotonation.

Authors:  J Gard Nelson; Yuxing Peng; Daniel W Silverstein; Jessica M J Swanson
Journal:  J Chem Theory Comput       Date:  2014-05-06       Impact factor: 6.006

5.  Microhydration and the Enhanced Acidity of Free Radicals.

Authors:  John C Walton
Journal:  Molecules       Date:  2018-02-14       Impact factor: 4.411

6.  Sulfur and Phosphorus Oxyacid Radicals.

Authors:  Michael Bühl; Tallulah Hutson; Alice Missio; John C Walton
Journal:  J Phys Chem A       Date:  2022-01-27       Impact factor: 2.781

  6 in total

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