Literature DB >> 20055447

Modulation of buried ionizable groups in proteins with engineered surface charge.

Angel L Pey1, David Rodriguez-Larrea, Jose A Gavira, Bertrand Garcia-Moreno, Jose M Sanchez-Ruiz.   

Abstract

Recent work has shown that proteins can tolerate hydrophobic-to-ionizable-residue mutations. Here, we provide experimental evidence that the essential properties (pK value, protonation state, local dynamics) of buried ionizable groups in proteins can be efficiently modulated through the rational design of the surface charge distribution, thus paving the way for the protein engineering exploitation of charge burial.

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Year:  2010        PMID: 20055447     DOI: 10.1021/ja909298v

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  13 in total

Review 1.  The pKa Cooperative: a collaborative effort to advance structure-based calculations of pKa values and electrostatic effects in proteins.

Authors:  Jens E Nielsen; M R Gunner; Bertrand E García-Moreno
Journal:  Proteins       Date:  2011-10-15

2.  Rational modification of protein stability by targeting surface sites leads to complicated results.

Authors:  Shifeng Xiao; Vadim Patsalo; Bing Shan; Yuan Bi; David F Green; Daniel P Raleigh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

3.  Design of a switchable eliminase.

Authors:  Ivan V Korendovych; Daniel W Kulp; Yibing Wu; Hong Cheng; Heinrich Roder; William F DeGrado
Journal:  Proc Natl Acad Sci U S A       Date:  2011-04-11       Impact factor: 11.205

4.  Uncovering the determinants of a highly perturbed tyrosine pKa in the active site of ketosteroid isomerase.

Authors:  Jason P Schwans; Fanny Sunden; Ana Gonzalez; Yingssu Tsai; Daniel Herschlag
Journal:  Biochemistry       Date:  2013-10-23       Impact factor: 3.162

Review 5.  Considering protonation as a posttranslational modification regulating protein structure and function.

Authors:  André Schönichen; Bradley A Webb; Matthew P Jacobson; Diane L Barber
Journal:  Annu Rev Biophys       Date:  2013-02-28       Impact factor: 12.981

6.  pKa predictions for proteins, RNAs, and DNAs with the Gaussian dielectric function using DelPhi pKa.

Authors:  Lin Wang; Lin Li; Emil Alexov
Journal:  Proteins       Date:  2015-10-16

7.  On the Modeling of Polar Component of Solvation Energy using Smooth Gaussian-Based Dielectric Function.

Authors:  Lin Li; Chuan Li; Emil Alexov
Journal:  J Theor Comput Chem       Date:  2014-05       Impact factor: 0.939

8.  Environment Polarity in Proteins Mapped Noninvasively by FTIR Spectroscopy.

Authors:  Joshua Manor; Esther S Feldblum; Martin T Zanni; Isaiah T Arkin
Journal:  J Phys Chem Lett       Date:  2012-03-12       Impact factor: 6.475

9.  Constant pH molecular dynamics of proteins in explicit solvent with proton tautomerism.

Authors:  Garrett B Goh; Benjamin S Hulbert; Huiqing Zhou; Charles L Brooks
Journal:  Proteins       Date:  2014-01-15

10.  On the Dielectric "Constant" of Proteins: Smooth Dielectric Function for Macromolecular Modeling and Its Implementation in DelPhi.

Authors:  Lin Li; Chuan Li; Zhe Zhang; Emil Alexov
Journal:  J Chem Theory Comput       Date:  2013-03-13       Impact factor: 6.006

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