Literature DB >> 20054431

Variable Selection in Nonparametric Varying-Coefficient Models for Analysis of Repeated Measurements.

Lifeng Wang1, Hongzhe Li, Jianhua Z Huang.   

Abstract

Nonparametric varying-coefficient models are commonly used for analysis of data measured repeatedly over time, including longitudinal and functional responses data. While many procedures have been developed for estimating the varying-coefficients, the problem of variable selection for such models has not been addressed. In this article, we present a regularized estimation procedure for variable selection that combines basis function approximations and the smoothly clipped absolute deviation (SCAD) penalty. The proposed procedure simultaneously selects significant variables with time-varying effects and estimates the nonzero smooth coefficient functions. Under suitable conditions, we have established the theoretical properties of our procedure, including consistency in variable selection and the oracle property in estimation. Here the oracle property means that the asymptotic distribution of an estimated coefficient function is the same as that when it is known a priori which variables are in the model. The method is illustrated with simulations and two real data examples, one for identifying risk factors in the study of AIDS and one using microarray time-course gene expression data to identify the transcription factors related to the yeast cell cycle process.

Entities:  

Year:  2008        PMID: 20054431      PMCID: PMC2801925          DOI: 10.1198/016214508000000788

Source DB:  PubMed          Journal:  J Am Stat Assoc        ISSN: 0162-1459            Impact factor:   5.033


  11 in total

1.  Serial regulation of transcriptional regulators in the yeast cell cycle.

Authors:  I Simon; J Barnett; N Hannett; C T Harbison; N J Rinaldi; T L Volkert; J J Wyrick; J Zeitlinger; D K Gifford; T S Jaakkola; R A Young
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

2.  Clustering of time-course gene expression data using a mixed-effects model with B-splines.

Authors:  Yihui Luan; Hongzhe Li
Journal:  Bioinformatics       Date:  2003-03-01       Impact factor: 6.937

3.  Identifying cooperativity among transcription factors controlling the cell cycle in yeast.

Authors:  Nilanjana Banerjee; Michael Q Zhang
Journal:  Nucleic Acids Res       Date:  2003-12-01       Impact factor: 16.971

4.  Statistical methods for identifying yeast cell cycle transcription factors.

Authors:  Huai-Kuang Tsai; Henry Horng-Shing Lu; Wen-Hsiung Li
Journal:  Proc Natl Acad Sci U S A       Date:  2005-09-12       Impact factor: 11.205

5.  Group SCAD regression analysis for microarray time course gene expression data.

Authors:  Lifeng Wang; Guang Chen; Hongzhe Li
Journal:  Bioinformatics       Date:  2007-04-26       Impact factor: 6.937

6.  Semiparametric models for longitudinal data with application to CD4 cell numbers in HIV seroconverters.

Authors:  S L Zeger; P J Diggle
Journal:  Biometrics       Date:  1994-09       Impact factor: 2.571

7.  Integrating regulatory motif discovery and genome-wide expression analysis.

Authors:  Erin M Conlon; X Shirley Liu; Jason D Lieb; Jun S Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2003-03-07       Impact factor: 11.205

8.  Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.

Authors:  P T Spellman; G Sherlock; M Q Zhang; V R Iyer; K Anders; M B Eisen; P O Brown; D Botstein; B Futcher
Journal:  Mol Biol Cell       Date:  1998-12       Impact factor: 4.138

9.  Transcriptional regulatory networks in Saccharomyces cerevisiae.

Authors:  Tong Ihn Lee; Nicola J Rinaldi; François Robert; Duncan T Odom; Ziv Bar-Joseph; Georg K Gerber; Nancy M Hannett; Christopher T Harbison; Craig M Thompson; Itamar Simon; Julia Zeitlinger; Ezra G Jennings; Heather L Murray; D Benjamin Gordon; Bing Ren; John J Wyrick; Jean-Bosco Tagne; Thomas L Volkert; Ernest Fraenkel; David K Gifford; Richard A Young
Journal:  Science       Date:  2002-10-25       Impact factor: 47.728

10.  Clustering of genes into regulons using integrated modeling-COGRIM.

Authors:  Guang Chen; Shane T Jensen; Christian J Stoeckert
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

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  31 in total

1.  Generalized semiparametrically structured ordinal models.

Authors:  Gerhard Tutz
Journal:  Biometrics       Date:  2003-06       Impact factor: 2.571

2.  Selection of effects in Cox frailty models by regularization methods.

Authors:  Andreas Groll; Trevor Hastie; Gerhard Tutz
Journal:  Biometrics       Date:  2017-01-13       Impact factor: 2.571

3.  Bayesian Hierarchical Varying-sparsity Regression Models with Application to Cancer Proteogenomics.

Authors:  Yang Ni; Francesco C Stingo; Min Jin Ha; Rehan Akbani; Veerabhadran Baladandayuthapani
Journal:  J Am Stat Assoc       Date:  2018-08-15       Impact factor: 5.033

Review 4.  Gene-Environment Interaction: A Variable Selection Perspective.

Authors:  Fei Zhou; Jie Ren; Xi Lu; Shuangge Ma; Cen Wu
Journal:  Methods Mol Biol       Date:  2021

5.  BAYESIAN GROUP LASSO FOR NONPARAMETRIC VARYING-COEFFICIENT MODELS WITH APPLICATION TO FUNCTIONAL GENOME-WIDE ASSOCIATION STUDIES.

Authors:  Jiahan Li; Zhong Wang; Runze Li; Rongling Wu
Journal:  Ann Appl Stat       Date:  2015-06       Impact factor: 2.083

6.  Data integration with high dimensionality.

Authors:  Xin Gao; Raymond J Carroll
Journal:  Biometrika       Date:  2017-05-09       Impact factor: 2.445

7.  A Functional Varying-Coefficient Single-Index Model for Functional Response Data.

Authors:  Jialiang Li; Chao Huang; Hongtu Zhu
Journal:  J Am Stat Assoc       Date:  2017-04-25       Impact factor: 5.033

8.  Group descent algorithms for nonconvex penalized linear and logistic regression models with grouped predictors.

Authors:  Patrick Breheny; Jian Huang
Journal:  Stat Comput       Date:  2015-03       Impact factor: 2.559

9.  On Varying-coefficient Independence Screening for High-dimensional Varying-coefficient Models.

Authors:  Rui Song; Feng Yi; Hui Zou
Journal:  Stat Sin       Date:  2014       Impact factor: 1.261

10.  A Sparse Structured Shrinkage Estimator for Nonparametric Varying-Coefficient Model with an Application in Genomics.

Authors:  Z John Daye; Jichun Xie; Hongzhe Li
Journal:  J Comput Graph Stat       Date:  2012-04-10       Impact factor: 2.302

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