Literature DB >> 20047879

jORCA: easily integrating bioinformatics Web Services.

Victoria Martín-Requena1, Javier Ríos, Maximiliano García, Sergio Ramírez, Oswaldo Trelles.   

Abstract

MOTIVATION: Web services technology is becoming the option of choice to deploy bioinformatics tools that are universally available. One of the major strengths of this approach is that it supports machine-to-machine interoperability over a network. However, a weakness of this approach is that various Web Services differ in their definition and invocation protocols, as well as their communication and data formats-and this presents a barrier to service interoperability.
RESULTS: jORCA is a desktop client aimed at facilitating seamless integration of Web Services. It does so by making a uniform representation of the different web resources, supporting scalable service discovery, and automatic composition of workflows. Usability is at the top of the jORCA agenda; thus it is a highly customizable and extensible application that accommodates a broad range of user skills featuring double-click invocation of services in conjunction with advanced execution-control, on the fly data standardization, extensibility of viewer plug-ins, drag-and-drop editing capabilities, plus a file-based browsing style and organization of favourite tools. The integration of bioinformatics Web Services is made easier to support a wider range of users. .

Mesh:

Year:  2010        PMID: 20047879     DOI: 10.1093/bioinformatics/btp709

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  6 in total

1.  KBWS: an EMBOSS associated package for accessing bioinformatics web services.

Authors:  Kazuki Oshita; Kazuharu Arakawa; Masaru Tomita
Journal:  Source Code Biol Med       Date:  2011-04-29

2.  MOWServ: a web client for integration of bioinformatic resources.

Authors:  Sergio Ramírez; Antonio Muñoz-Mérida; Johan Karlsson; Maximiliano García; Antonio J Pérez-Pulido; M Gonzalo Claros; Oswaldo Trelles
Journal:  Nucleic Acids Res       Date:  2010-06-04       Impact factor: 16.971

3.  Workflows for microarray data processing in the Kepler environment.

Authors:  Thomas Stropp; Timothy McPhillips; Bertram Ludäscher; Mark Bieda
Journal:  BMC Bioinformatics       Date:  2012-05-17       Impact factor: 3.169

4.  The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Authors:  Toshiaki Katayama; Mark D Wilkinson; Rutger Vos; Takeshi Kawashima; Shuichi Kawashima; Mitsuteru Nakao; Yasunori Yamamoto; Hong-Woo Chun; Atsuko Yamaguchi; Shin Kawano; Jan Aerts; Kiyoko F Aoki-Kinoshita; Kazuharu Arakawa; Bruno Aranda; Raoul Jp Bonnal; José M Fernández; Takatomo Fujisawa; Paul Mk Gordon; Naohisa Goto; Syed Haider; Todd Harris; Takashi Hatakeyama; Isaac Ho; Masumi Itoh; Arek Kasprzyk; Nobuhiro Kido; Young-Joo Kim; Akira R Kinjo; Fumikazu Konishi; Yulia Kovarskaya; Greg von Kuster; Alberto Labarga; Vachiranee Limviphuvadh; Luke McCarthy; Yasukazu Nakamura; Yunsun Nam; Kozo Nishida; Kunihiro Nishimura; Tatsuya Nishizawa; Soichi Ogishima; Tom Oinn; Shinobu Okamoto; Shujiro Okuda; Keiichiro Ono; Kazuki Oshita; Keun-Joon Park; Nicholas Putnam; Martin Senger; Jessica Severin; Yasumasa Shigemoto; Hideaki Sugawara; James Taylor; Oswaldo Trelles; Chisato Yamasaki; Riu Yamashita; Noriyuki Satoh; Toshihisa Takagi
Journal:  J Biomed Semantics       Date:  2011-08-02

5.  MAPI: towards the integrated exploitation of bioinformatics Web Services.

Authors:  Sergio Ramirez; Johan Karlsson; Oswaldo Trelles
Journal:  BMC Bioinformatics       Date:  2011-10-27       Impact factor: 3.307

6.  MAPI: a software framework for distributed biomedical applications.

Authors:  Johan Karlsson; Oswaldo Trelles
Journal:  J Biomed Semantics       Date:  2013-01-11
  6 in total

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