Literature DB >> 20047317

Solvent effects on catalysis by Escherichia coli dihydrofolate reductase.

E Joel Loveridge1, Lai-Hock Tey, Rudolf K Allemann.   

Abstract

Hydride transfer catalyzed by dihydrofolate reductase (DHFR) has been described previously within an environmentally coupled model of hydrogen tunneling, where protein motions control binding of substrate and cofactor to generate a tunneling ready conformation and modulate the width of the activation barrier and hence the reaction rate. Changes to the composition of the reaction medium are known to perturb protein motions. We have measured kinetic parameters of the reaction catalyzed by DHFR from Escherichia coli in the presence of various cosolvents and cosolutes and show that the dielectric constant, but not the viscosity, of the reaction medium affects the rate of reaction. Neither the primary kinetic isotope effect on the reaction nor its temperature dependence were affected by changes to the bulk solvent properties. These results are in agreement with our previous report on the effect of solvent composition on catalysis by DHFR from the hyperthermophile Thermotoga maritima. However, the effect of solvent on the temperature dependence of the kinetic isotope effect on hydride transfer catalyzed by E. coli DHFR is difficult to explain within a model, in which long-range motions couple to the chemical step of the reaction, but may indicate the existence of a short-range promoting vibration or the presence of multiple nearly isoenergetic conformational substates of enzymes with similar but distinct catalytic properties.

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Year:  2010        PMID: 20047317     DOI: 10.1021/ja909353c

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  18 in total

1.  Taking Ockham's razor to enzyme dynamics and catalysis.

Authors:  David R Glowacki; Jeremy N Harvey; Adrian J Mulholland
Journal:  Nat Chem       Date:  2012-01-29       Impact factor: 24.427

2.  Evidence that a 'dynamic knockout' in Escherichia coli dihydrofolate reductase does not affect the chemical step of catalysis.

Authors:  E Joel Loveridge; Enas M Behiry; Jiannan Guo; Rudolf K Allemann
Journal:  Nat Chem       Date:  2012-03-11       Impact factor: 24.427

3.  Slow conformational motions that favor sub-picosecond motions important for catalysis.

Authors:  J R Exequiel T Pineda; Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2010-11-15       Impact factor: 2.991

Review 4.  Coupled motions in enzyme catalysis.

Authors:  Vishal C Nashine; Sharon Hammes-Schiffer; Stephen J Benkovic
Journal:  Curr Opin Chem Biol       Date:  2010-08-20       Impact factor: 8.822

5.  Unraveling the role of protein dynamics in dihydrofolate reductase catalysis.

Authors:  Louis Y P Luk; J Javier Ruiz-Pernía; William M Dawson; Maite Roca; E Joel Loveridge; David R Glowacki; Jeremy N Harvey; Adrian J Mulholland; Iñaki Tuñón; Vicent Moliner; Rudolf K Allemann
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-24       Impact factor: 11.205

6.  Dynamics and dissipation in enzyme catalysis.

Authors:  Nicholas Boekelheide; Romelia Salomón-Ferrer; Thomas F Miller
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-19       Impact factor: 11.205

7.  Protein dynamics and enzymatic chemical barrier passage.

Authors:  Dimitri Antoniou; Steven D Schwartz
Journal:  J Phys Chem B       Date:  2011-11-15       Impact factor: 2.991

8.  Temperature dependence of the kinetic isotope effects in thymidylate synthase. A theoretical study.

Authors:  Natalia Kanaan; Silvia Ferrer; Sergio Martí; Mireia Garcia-Viloca; Amnon Kohen; Vicent Moliner
Journal:  J Am Chem Soc       Date:  2011-04-08       Impact factor: 15.419

9.  Modulating Enzyme Activity by Altering Protein Dynamics with Solvent.

Authors:  Michael R Duff; Jose M Borreguero; Matthew J Cuneo; Arvind Ramanathan; Junhong He; Ganesh Kamath; S Chakra Chennubhotla; Flora Meilleur; Elizabeth E Howell; Kenneth W Herwig; Dean A A Myles; Pratul K Agarwal
Journal:  Biochemistry       Date:  2018-07-06       Impact factor: 3.162

10.  The role of large-scale motions in catalysis by dihydrofolate reductase.

Authors:  E Joel Loveridge; Lai-Hock Tey; Enas M Behiry; William M Dawson; Rhiannon M Evans; Sara B-M Whittaker; Ulrich L Günther; Christopher Williams; Matthew P Crump; Rudolf K Allemann
Journal:  J Am Chem Soc       Date:  2011-11-22       Impact factor: 15.419

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