Literature DB >> 20046820

PROCESS FLOW FOR CLASSIFICATION AND CLUSTERING OF FRUIT FLY GENE EXPRESSION PATTERNS.

Andreas Heffel1, Peter F Stadler, Sonja J Prohaska, Gerhard Kauer, Jens-Peer Kuska.   

Abstract

The rapidly growing collection of fruit fly embryo images makes automated Image Segmentation and classification an indispensable requirement for a large-scale analysis of in situ hybridization (ISH) - gene expression patterns (GEP). We present here such an automated process flow for Segmenting, Classification, and Clustering large-scale sets of Drosophila melanogaster GEP that is capable of dealing with most of the complications implicated in the images.

Entities:  

Year:  2008        PMID: 20046820      PMCID: PMC2800053          DOI: 10.1109/ICIP.2008.4711856

Source DB:  PubMed          Journal:  Proc Int Conf Image Proc        ISSN: 1522-4880


  7 in total

1.  Genetic-based EM algorithm for learning Gaussian mixture models.

Authors:  Franz Pernkopf; Djamel Bouchaffra
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2005-08       Impact factor: 6.226

2.  Snakes, shapes, and gradient vector flow.

Authors:  C Xu; J L Prince
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

3.  BEST: a novel computational approach for comparing gene expression patterns from early stages of Drosophila melanogaster development.

Authors:  Sudhir Kumar; Karthik Jayaraman; Sethuraman Panchanathan; Rajalakshmi Gurunathan; Ana Marti-Subirana; Stuart J Newfeld
Journal:  Genetics       Date:  2002-12       Impact factor: 4.562

Review 4.  Impressive expressions: developing a systematic database of gene-expression patterns in Drosophila embryogenesis.

Authors:  Haiqiong Montalta-He; Heinrich Reichert
Journal:  Genome Biol       Date:  2003-01-28       Impact factor: 13.583

5.  Automatic image analysis for gene expression patterns of fly embryos.

Authors:  Hanchuan Peng; Fuhui Long; Jie Zhou; Garmay Leung; Michael B Eisen; Eugene W Myers
Journal:  BMC Cell Biol       Date:  2007-07-10       Impact factor: 4.241

6.  Systematic determination of patterns of gene expression during Drosophila embryogenesis.

Authors:  Pavel Tomancak; Amy Beaton; Richard Weiszmann; Elaine Kwan; ShengQiang Shu; Suzanna E Lewis; Stephen Richards; Michael Ashburner; Volker Hartenstein; Susan E Celniker; Gerald M Rubin
Journal:  Genome Biol       Date:  2002-12-23       Impact factor: 13.583

7.  Global analysis of patterns of gene expression during Drosophila embryogenesis.

Authors:  Pavel Tomancak; Benjamin P Berman; Amy Beaton; Richard Weiszmann; Elaine Kwan; Volker Hartenstein; Susan E Celniker; Gerald M Rubin
Journal:  Genome Biol       Date:  2007       Impact factor: 13.583

  7 in total
  3 in total

1.  Quantitative multivariate analysis of dynamic multicellular morphogenic trajectories.

Authors:  Douglas E White; Jonathan B Sylvester; Thomas J Levario; Hang Lu; J Todd Streelman; Todd C McDevitt; Melissa L Kemp
Journal:  Integr Biol (Camb)       Date:  2015-07       Impact factor: 2.192

2.  SPEX2: automated concise extraction of spatial gene expression patterns from Fly embryo ISH images.

Authors:  Kriti Puniyani; Christos Faloutsos; Eric P Xing
Journal:  Bioinformatics       Date:  2010-06-15       Impact factor: 6.937

3.  Automatic annotation of spatial expression patterns via sparse Bayesian factor models.

Authors:  Iulian Pruteanu-Malinici; Daniel L Mace; Uwe Ohler
Journal:  PLoS Comput Biol       Date:  2011-07-21       Impact factor: 4.475

  3 in total

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