| Literature DB >> 20040103 |
For-Wey Lung1, Bih-Ching Shu, Wei-Tsung Kao, C Nathan Chen, Yu-Chi Ku, Dong-Sheng Tzeng.
Abstract
BACKGROUND: The tumour supressor gene TP53 is thought to be involved in neural apoptosis. The polymorphism at codon 72 in TP53 and the long form variants of the upstream variable number of tandem repeats (uVNTR) polymorphism in the dopamine D4 receptor (DRD4) gene are reported to confer susceptibility to schizophrenia.Entities:
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Year: 2009 PMID: 20040103 PMCID: PMC2808306 DOI: 10.1186/1471-2350-10-147
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
The distributions of genotypes and alleles for the TP53 codon 72 and DRD4 uVNTR polymorphisms.
| Polymorphism | Genotype frequency (%) | HWE-p | p value | Allele frequency (%) | P value | Odds ratio (95% CI) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Patient (n = 917) | 193 (21.05) | 453 (49.40) | 271(29.55) | 0.884 | 0.229 | 839 (45.75) | 995 (54.25) | 0.404 | 1.072 (0.910--1.262)a | ||||||||
| Control (n = 427) | 74 (17.33) | 228 (53.40) | 125 (29.27) | 0.084 | 376 (44.03) | 478 (55.97) | |||||||||||
| DRD4 uVNTR | 2/2 | 2/3 | 2/4 | 2/5 | 3/3 | 3/4 | 3/5 | 4/4 | 4/5 | 4/6 | 5/6 | Short (≤ 4 repeats) | Long (≥ 5 repeats) | ||||
| Patient (n = 914) | 60 | 0 | 263 | 8 | 1 | 16 | 1 | 521 | 24 | 19 | 1 | < 0.001 | 1774 (97.05) | 54 (2.95) | 0.001 | 3.189 1.535--6.622)b | |
| Control (n = 423) | 49 | 1 | 78 | 3 | 1 | 6 | 0 | 280 | 2 | 3 | 0 | 838 (99.05) | 8 (0.95) | ||||
Genotyping results for the TP53 codon 72 polymorphism were lacking for 17 patients with schizophrenia and six controls; genotyping information for the DRD4 uVNTR polymorphism was lacking for 20 patients with schizophrenia and 10 controls; HWE-p: p value of chi-square test for Hardy--Weinberg Equilibrium; a: odds ratio of the C allele to the G allele of the codon 72 polymorphism in TP53in relation to schizophrenia; b: odds ratio of the long form variants (≥ 5 repeats) to the short form variants (≤ 4 repeats) shows the former confers enhanced risk of vulnerability to schizophrenia.
Results of hierarchical logistic regression analysis aimed at determining whether the TP53 codon 72 and DRD4 uVNTR polymorphisms were associated with schizophrenia after the contributions of age and gender were taken into account.
| Model 1. | ||||||
|---|---|---|---|---|---|---|
| Gender | --0.891 | 0.128 | 48.735 | 1 | < 0.001** | 0.410 |
| Age | --0.045 | 0.005 | 83.772 | 1 | < 0.001** | 0.956 |
| P53CC | 0.218 | 0.171 | 1.618 | 1 | 0.203 | 1.244 |
| P53GG | 0.083 | 0.146 | 0.320 | 1 | 0.571 | 1.086 |
| Constant | 3.760 | 0.276 | 185.052 | 1 | < 0.001 | 42.954 |
| Gender | --0.891 | 0.128 | 48.735 | 1 | < 0.001** | 0.410 |
| Age | --0.045 | 0.005 | 83.772 | 1 | < 0.001** | 0.956 |
| DRD4c | 0.841 | 0.401 | 4.393 | 1 | 0.036* | 2.319 |
| Constant | 3.777 | 0.270 | 195.381 | 1 | < 0.001 | 43.668 |
| Gender | --0.891 | 0.128 | 48.735 | 1 | < 0.001** | 0.410 |
| Age | --0.045 | 0.005 | 83.772 | 1 | < 0.001** | 0.956 |
| DRD4c by p53CC | 1.459 | 1.054 | 1.916 | 1 | 0.166 | 4.302 |
| Constant | 3.819 | 0.270 | 200.781 | 1 | < 0.001 | 45.573 |
B: coefficient of regression; S.E.: Standard Error; Wald: the index of regression effect; df: degrees of freedom; Sig: P value; Exp(B): odds ratio; p53CC: dummy variable where 1 refers to the CC genotype of the TP53 codon 72 polymorphism and 0 refers to the other possible genotypes; p53GG: dummy variable where 1 refers to the GG genotype of the TP53 codon 72 polymorphism and 0 refers to the other possible genotypes; DRD4c: dummy variable where 1 refers to the long form allelic variants of the DRD4 uVNTR polymorphism (≥ 5 repeats) and 0 refers to the short form allelic variants (≤ 4 repeats); DRD4c by p53CC: the genetic effect attributed to the possible interaction between the long form variants of the DRD4 uVNTR polymorphism and the CC genotype of the TP53 codon 72 polymorphism; ** indicates statistical significance (p < 0.001).
Figure 1Structural equation modelling of inter-relationships among variables with respect to schizophrenia. p53CC: dummy variable where 1 refers to the CC genotype of the TP53 codon 72 polymorphism and 0 refers to the other possible genotypes; DRD4c: dummy variable where 1 refers to the long form allelic variants of the DRD4 uVNTR polymorphism (≥ 5 repeats) and 0 refers to the short form allelic variants (≤ 4 repeats); AGFI: adjusted goodness-of-fit index. The numbers are the coefficients of correlation between two variables.