Literature DB >> 20039659

Computational studies on response and binding selectivity of fluorescence sensors.

George A Hudson1, Lei Cheng, Jiamei Yu, Yong Yan, Daniel J Dyer, Matthew E McCarroll, Lichang Wang.   

Abstract

Using a computational strategy based on density functional theory calculations, we successfully designed a fluorescent sensor for detecting Zn(2+) [J. Phys. Chem. B 2006, 110, 22991-22994]. In this work, we report our further studies on the computational design protocol for developing Photoinduced Electron Transfer (PET) fluorescence sensors. This protocol was applied to design a PET fluorescence sensor for Zn(2+) ions, which consists of anthracene as the fluorophore connected to pyridine as the receptor through dimethylethanamine as the linker. B3LYP and time-dependent B3LYP calculations were performed with the basis set 6-31G(d,p), 6-31+G(d,p), 6-311G(d,p), and 6-311+G(d,p). The calculated HOMO and LUMO energies of the fluorophore and receptor using all four basis sets show that the relative energy levels remain unchanged. This indicates that any of these basis sets can be used in calculating the relative molecular orbital (MO) energy levels. Furthermore, the relative MO energies of the independent fluorophore and receptor are not altered when they are linked together, which suggests that one can calculate the MO energies of these components separately and use them as the MO energies of the free sensor. These are promising outcomes for the computational design of sensors, though more case studies are needed to further confirm these conclusions. The binding selectivity studies indicate that the predicted sensor can be used for Zn(2+) even in the presence of the divalent cation, Ca(2+).

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Year:  2010        PMID: 20039659      PMCID: PMC2859673          DOI: 10.1021/jp908368k

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  19 in total

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Authors:  X Wu; J Kim; J S Dordick
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2.  Emission ratiometric imaging of intracellular zinc: design of a benzoxazole fluorescent sensor and its application in two-photon microscopy.

Authors:  Masayasu Taki; Janet L Wolford; Thomas V O'Halloran
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3.  Computational prediction and experimental evaluation of a photoinduced electron-transfer sensor.

Authors:  Matthew E McCarroll; Yu Shi; Samantha Harris; Surendra Puli; Irene Kimaru; Ruisong Xu; Lichang Wang; Daniel J Dyer
Journal:  J Phys Chem B       Date:  2006-11-23       Impact factor: 2.991

4.  Development of the Colle-Salvetti correlation-energy formula into a functional of the electron density.

Authors: 
Journal:  Phys Rev B Condens Matter       Date:  1988-01-15

5.  Fluorescent sensors for Zn(2+) based on a fluorescein platform: synthesis, properties and intracellular distribution.

Authors:  S C Burdette; G K Walkup; B Spingler; R Y Tsien; S J Lippard
Journal:  J Am Chem Soc       Date:  2001-08-15       Impact factor: 15.419

6.  Ratiometric Zn2+ sensor and strategy for Hg2+ selective recognition by central metal ion replacement.

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7.  Selective zinc sensor molecules with various affinities for Zn2+, revealing dynamics and regional distribution of synaptically released Zn2+ in hippocampal slices.

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8.  A TD-DFT study of the photochemistry of urocanic acid in biologically relevant ionic, rotameric, and protomeric forms.

Authors:  J Danielsson; J Ulicný; A Laaksonen
Journal:  J Am Chem Soc       Date:  2001-10-10       Impact factor: 15.419

9.  TD-DFT description of photoabsorption and electron transfer in a covalently bonded porphyrin-fullerene dyad.

Authors:  Oana Cramariuc; Terttu I Hukka; Tapio T Rantala; Helge Lemmetyinen
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10.  A novel, cell-permeable, fluorescent probe for ratiometric imaging of zinc ion.

Authors:  Satoko Maruyama; Kazuya Kikuchi; Tomoya Hirano; Yasuteru Urano; Tetsuo Nagano
Journal:  J Am Chem Soc       Date:  2002-09-11       Impact factor: 15.419

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  2 in total

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2.  First-principles study of terpyrrole as a potential hydrogen cyanide sensor: DFT calculations.

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Journal:  J Mol Model       Date:  2015-09-29       Impact factor: 1.810

  2 in total

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