| Literature DB >> 20035629 |
Matthew T Bishop1, Catherine Pennington, Craig A Heath, Robert G Will, Richard S G Knight.
Abstract
BACKGROUND: Genetic analysis of the human prion protein gene (PRNP) in suspect cases of Creutzfeldt-Jakob disease (CJD) is necessary for accurate diagnosis and case classification. Previous publications on the genetic variation at the PRNP locus have highlighted the presence of numerous polymorphisms, in addition to the well recognised one at codon 129, with significant variability between geographically distinct populations. It is therefore of interest to consider their influence on susceptibility or the clinico-pathological disease phenotype. This study aimed to characterise the frequency and effect of PRNP open reading frame polymorphisms other than codon 129 in both disease and control samples sourced from the United Kingdom population.Entities:
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Year: 2009 PMID: 20035629 PMCID: PMC2806268 DOI: 10.1186/1471-2350-10-146
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Figure 1Detection of . Panels A and B: Genotyping by PCR amplification of PRNP and restriction enzyme digest. (Mw: 100 bp molecular weight ladder (dark band 600 bp); MV, MM, VV: codon 129 genotypes; WT: wild-type codon 117 genotype; MUT: heterozygous for codon 117 polymorphism) Panels C, D, and E: Electropherograms for polymorphisms detected by sequence analysis. (Arrows point to heterozygous base position.)
PRNP gene sequence variation in vCJD cases
| Codon | Number Tested | Genotype Data |
|---|---|---|
| 129 (Met/Val) | 147 | All cases MM |
| 4 (blood transfusion associated infections) | MM (n = 3) | |
| 2 (appendix tissue) | VV (n = 2)** | |
| 202 (Asp/Asp) | 118 | DD (n = 2) |
| 219 (Glu/Lys) | 118 | EK (n = 2) |
| 24 bp deletion | 118 | DelR34 (n = 1) |
* Non-clinical, non-neuropathologically confirmed case
** From anonymous screening program for vCJD associated PrPSc deposition
PRNP gene sequence variation in sCJD cases and controls
| 309 sCJD Patients | 192 UK DNA Controls | 778 Scottish Blood Donor Controls | |
|---|---|---|---|
| Codon 129 (Met/Val) | MM (n = 184; 59.5%) | MM (n = 90; 46.9%) | MM (n = 337; 43.3%) |
| Codon 117 (Ala/Ala) | n = 13; 4.2% | n = 9; 4.7% | n = 47; 6.0% |
| 24 bp Deletion | n = 4; 1.3% | n = 1; 0.5% | n = 12; 1.5% |
| Codon 167 | DG (n = 1; 0.32%) | (no sequence data available) | (no sequence data available) |
| Codon | PP (n = 1; 0.32%) | (no sequence data available) | (no sequence data available) |
Figure 2. Codon 129 and PRNP polymorphism frequency in relation to age of Scottish Blood Donors (n = 778).
Figure 3Codon 129 and sex of Scottish Blood Donors. Codon 129 genotype frequency in relation to sex of Scottish Blood Donors (n = 778, male = 456 (solid bars), female = 322 (hatched bars)).
Statistical analysis of PRNP polymorphism frequencies
| Chi-Squared Test - P value | |||
|---|---|---|---|
| Sequenced sCJD (n = 309) vs. | 0.582 | NA | NA |
| UK DNA Controls (n = 192) vs. | 0.185 | 0.584 | 0.452* |
| Sequenced sCJD (n = 309) vs. | <0.001 | 0.975 | 0.700* |
| Sequenced sCJD (n = 309) vs. | <0.001 | 0.295 | 0.978* |
| Sequenced vCJD (n = 118) vs. | <0.001 | NA | 0.861* |
*: Chi-Squared approximation may be incorrect due to low numbers; NA: no comparison could be made