Literature DB >> 20034105

Transcriptional regulatory regions of gap43 needed in developing and regenerating retinal ganglion cells.

Brandon W Kusik1, Dena R Hammond, Ava J Udvadia.   

Abstract

Mammals and fish differ in their ability to express axon growth-associated genes in response to CNS injury, which contributes to the differences in their ability for CNS regeneration. Previously we demonstrated that for the axon growth-associated gene, gap43, regions of the rat promoter that are sufficient to promote reporter gene expression in the developing zebrafish nervous system are not sufficient to promote expression in regenerating retinal ganglion cells in zebrafish. Recently, we identified a 3.6-kb gap43 promoter fragment from the pufferfish, Takifugu rubripes (fugu), that can promote reporter gene expression during both development and regeneration. Using promoter deletion analysis, we have found regions of the 3.6-kb fugu gap43 promoter that are necessary for expression in regenerating, but not developing, retinal ganglion cells. Within the 3.6-kb promoter, we have identified elements that are highly conserved among fish, as well as elements conserved among fish, mammals, and birds.

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Year:  2010        PMID: 20034105      PMCID: PMC3101714          DOI: 10.1002/dvdy.22190

Source DB:  PubMed          Journal:  Dev Dyn        ISSN: 1058-8388            Impact factor:   3.780


  58 in total

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4.  PipTools: a computational toolkit to annotate and analyze pairwise comparisons of genomic sequences.

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5.  An element in the alpha1-tubulin promoter is necessary for retinal expression during optic nerve regeneration but not after eye injury in the adult zebrafish.

Authors:  Marie-Claude Senut; Abhilasha Gulati-Leekha; Daniel Goldman
Journal:  J Neurosci       Date:  2004-09-01       Impact factor: 6.167

6.  Construction and detection of fluorescent, germline transgenic zebrafish.

Authors:  Elwood Linney; Ava J Udvadia
Journal:  Methods Mol Biol       Date:  2004

7.  Growth-associated protein-43 is required for commissural axon guidance in the developing vertebrate nervous system.

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8.  I-SceI meganuclease mediates highly efficient transgenesis in fish.

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9.  Spinal axon regeneration induced by elevation of cyclic AMP.

Authors:  Jin Qiu; Dongming Cai; Haining Dai; Marietta McAtee; Paul N Hoffman; Barbara S Bregman; Marie T Filbin
Journal:  Neuron       Date:  2002-06-13       Impact factor: 17.173

10.  Arginase I and polyamines act downstream from cyclic AMP in overcoming inhibition of axonal growth MAG and myelin in vitro.

Authors:  Dongming Cai; Kangwen Deng; Wilfredo Mellado; Junghee Lee; Rajiv R Ratan; Marie T Filbin
Journal:  Neuron       Date:  2002-08-15       Impact factor: 17.173

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  16 in total

1.  Ectopic expression of transcription factor AP-2δ in developing retina: effect on PSA-NCAM and axon routing.

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2.  Different mechanisms regulate expression of zebrafish myelin protein zero (P0) in myelinating oligodendrocytes and its induction following axonal injury.

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3.  Heterogeneous nuclear ribonucleoprotein K, an RNA-binding protein, is required for optic axon regeneration in Xenopus laevis.

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4.  Mammalian target of rapamycin (mTOR) activation increases axonal growth capacity of injured peripheral nerves.

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Journal:  J Biol Chem       Date:  2010-07-08       Impact factor: 5.157

Review 5.  Far upstream element binding protein 1: a commander of transcription, translation and beyond.

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6.  Far Upstream Element-Binding Protein 1 Binds the 3' Untranslated Region of PKD2 and Suppresses Its Translation.

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Journal:  J Am Soc Nephrol       Date:  2016-02-02       Impact factor: 10.121

Review 7.  Optic nerve regeneration: A long view.

Authors:  Yuqin Yin; Silmara De Lima; Hui-Ya Gilbert; Nicholas J Hanovice; Sheri L Peterson; Rheanna M Sand; Elena G Sergeeva; Kimberly A Wong; Lili Xie; Larry I Benowitz
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Review 8.  Genetic dissection of axon regeneration.

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Journal:  Curr Opin Neurobiol       Date:  2010-09-09       Impact factor: 6.627

9.  Extrinsic and intrinsic determinants of nerve regeneration.

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10.  Integrated analyses of zebrafish miRNA and mRNA expression profiles identify miR-29b and miR-223 as potential regulators of optic nerve regeneration.

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Journal:  BMC Genomics       Date:  2015-08-12       Impact factor: 3.969

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