Literature DB >> 20031585

Analysis of complex disease association and linkage studies using the University of California Santa Cruz Genome Browser.

Tianyuan Wang1, Terrence S Furey.   

Abstract

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Year:  2009        PMID: 20031585      PMCID: PMC2798134          DOI: 10.1161/CIRCGENETICS.108.843946

Source DB:  PubMed          Journal:  Circ Cardiovasc Genet        ISSN: 1942-3268


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  21 in total

1.  Genome browsing with Ensembl: a practical overview.

Authors:  Giulietta Spudich; Xosé M Fernández-Suárez; Ewan Birney
Journal:  Brief Funct Genomic Proteomic       Date:  2007-10-29

Review 2.  UCSC genome browser: deep support for molecular biomedical research.

Authors:  Mary E Mangan; Jennifer M Williams; Scott M Lathe; Donna Karolchik; Warren C Lathe
Journal:  Biotechnol Annu Rev       Date:  2008

Review 3.  UCSC genome browser tutorial.

Authors:  Ann S Zweig; Donna Karolchik; Robert M Kuhn; David Haussler; W James Kent
Journal:  Genomics       Date:  2008-06-02       Impact factor: 5.736

4.  A common allele on chromosome 9 associated with coronary heart disease.

Authors:  Ruth McPherson; Alexander Pertsemlidis; Nihan Kavaslar; Alexandre Stewart; Robert Roberts; David R Cox; David A Hinds; Len A Pennacchio; Anne Tybjaerg-Hansen; Aaron R Folsom; Eric Boerwinkle; Helen H Hobbs; Jonathan C Cohen
Journal:  Science       Date:  2007-05-03       Impact factor: 47.728

5.  The sequence of the human genome.

Authors:  J C Venter; M D Adams; E W Myers; P W Li; R J Mural; G G Sutton; H O Smith; M Yandell; C A Evans; R A Holt; J D Gocayne; P Amanatides; R M Ballew; D H Huson; J R Wortman; Q Zhang; C D Kodira; X H Zheng; L Chen; M Skupski; G Subramanian; P D Thomas; J Zhang; G L Gabor Miklos; C Nelson; S Broder; A G Clark; J Nadeau; V A McKusick; N Zinder; A J Levine; R J Roberts; M Simon; C Slayman; M Hunkapiller; R Bolanos; A Delcher; I Dew; D Fasulo; M Flanigan; L Florea; A Halpern; S Hannenhalli; S Kravitz; S Levy; C Mobarry; K Reinert; K Remington; J Abu-Threideh; E Beasley; K Biddick; V Bonazzi; R Brandon; M Cargill; I Chandramouliswaran; R Charlab; K Chaturvedi; Z Deng; V Di Francesco; P Dunn; K Eilbeck; C Evangelista; A E Gabrielian; W Gan; W Ge; F Gong; Z Gu; P Guan; T J Heiman; M E Higgins; R R Ji; Z Ke; K A Ketchum; Z Lai; Y Lei; Z Li; J Li; Y Liang; X Lin; F Lu; G V Merkulov; N Milshina; H M Moore; A K Naik; V A Narayan; B Neelam; D Nusskern; D B Rusch; S Salzberg; W Shao; B Shue; J Sun; Z Wang; A Wang; X Wang; J Wang; M Wei; R Wides; C Xiao; C Yan; A Yao; J Ye; M Zhan; W Zhang; H Zhang; Q Zhao; L Zheng; F Zhong; W Zhong; S Zhu; S Zhao; D Gilbert; S Baumhueter; G Spier; C Carter; A Cravchik; T Woodage; F Ali; H An; A Awe; D Baldwin; H Baden; M Barnstead; I Barrow; K Beeson; D Busam; A Carver; A Center; M L Cheng; L Curry; S Danaher; L Davenport; R Desilets; S Dietz; K Dodson; L Doup; S Ferriera; N Garg; A Gluecksmann; B Hart; J Haynes; C Haynes; C Heiner; S Hladun; D Hostin; J Houck; T Howland; C Ibegwam; J Johnson; F Kalush; L Kline; S Koduru; A Love; F Mann; D May; S McCawley; T McIntosh; I McMullen; M Moy; L Moy; B Murphy; K Nelson; C Pfannkoch; E Pratts; V Puri; H Qureshi; M Reardon; R Rodriguez; Y H Rogers; D Romblad; B Ruhfel; R Scott; C Sitter; M Smallwood; E Stewart; R Strong; E Suh; R Thomas; N N Tint; S Tse; C Vech; G Wang; J Wetter; S Williams; M Williams; S Windsor; E Winn-Deen; K Wolfe; J Zaveri; K Zaveri; J F Abril; R Guigó; M J Campbell; K V Sjolander; B Karlak; A Kejariwal; H Mi; B Lazareva; T Hatton; A Narechania; K Diemer; A Muruganujan; N Guo; S Sato; V Bafna; S Istrail; R Lippert; R Schwartz; B Walenz; S Yooseph; D Allen; A Basu; J Baxendale; L Blick; M Caminha; J Carnes-Stine; P Caulk; Y H Chiang; M Coyne; C Dahlke; A Deslattes Mays; M Dombroski; M Donnelly; D Ely; S Esparham; C Fosler; H Gire; S Glanowski; K Glasser; A Glodek; M Gorokhov; K Graham; B Gropman; M Harris; J Heil; S Henderson; J Hoover; D Jennings; C Jordan; J Jordan; J Kasha; L Kagan; C Kraft; A Levitsky; M Lewis; X Liu; J Lopez; D Ma; W Majoros; J McDaniel; S Murphy; M Newman; T Nguyen; N Nguyen; M Nodell; S Pan; J Peck; M Peterson; W Rowe; R Sanders; J Scott; M Simpson; T Smith; A Sprague; T Stockwell; R Turner; E Venter; M Wang; M Wen; D Wu; M Wu; A Xia; A Zandieh; X Zhu
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

6.  Genomewide association analysis of coronary artery disease.

Authors:  Nilesh J Samani; Jeanette Erdmann; Alistair S Hall; Christian Hengstenberg; Massimo Mangino; Bjoern Mayer; Richard J Dixon; Thomas Meitinger; Peter Braund; H-Erich Wichmann; Jennifer H Barrett; Inke R König; Suzanne E Stevens; Silke Szymczak; David-Alexandre Tregouet; Mark M Iles; Friedrich Pahlke; Helen Pollard; Wolfgang Lieb; Francois Cambien; Marcus Fischer; Willem Ouwehand; Stefan Blankenberg; Anthony J Balmforth; Andrea Baessler; Stephen G Ball; Tim M Strom; Ingrid Braenne; Christian Gieger; Panos Deloukas; Martin D Tobin; Andreas Ziegler; John R Thompson; Heribert Schunkert
Journal:  N Engl J Med       Date:  2007-07-18       Impact factor: 91.245

7.  An open access database of genome-wide association results.

Authors:  Andrew D Johnson; Christopher J O'Donnell
Journal:  BMC Med Genet       Date:  2009-01-22       Impact factor: 2.103

8.  The UCSC Genome Browser Database: update 2009.

Authors:  R M Kuhn; D Karolchik; A S Zweig; T Wang; K E Smith; K R Rosenbloom; B Rhead; B J Raney; A Pohl; M Pheasant; L Meyer; F Hsu; A S Hinrichs; R A Harte; B Giardine; P Fujita; M Diekhans; T Dreszer; H Clawson; G P Barber; D Haussler; W J Kent
Journal:  Nucleic Acids Res       Date:  2008-11-07       Impact factor: 16.971

9.  Database resources of the National Center for Biotechnology Information.

Authors:  David L Wheeler; Tanya Barrett; Dennis A Benson; Stephen H Bryant; Kathi Canese; Vyacheslav Chetvernin; Deanna M Church; Michael Dicuccio; Ron Edgar; Scott Federhen; Michael Feolo; Lewis Y Geer; Wolfgang Helmberg; Yuri Kapustin; Oleg Khovayko; David Landsman; David J Lipman; Thomas L Madden; Donna R Maglott; Vadim Miller; James Ostell; Kim D Pruitt; Gregory D Schuler; Martin Shumway; Edwin Sequeira; Steven T Sherry; Karl Sirotkin; Alexandre Souvorov; Grigory Starchenko; Roman L Tatusov; Tatiana A Tatusova; Lukas Wagner; Eugene Yaschenko
Journal:  Nucleic Acids Res       Date:  2007-11-27       Impact factor: 16.971

10.  Ensembl 2008.

Authors:  P Flicek; B L Aken; K Beal; B Ballester; M Caccamo; Y Chen; L Clarke; G Coates; F Cunningham; T Cutts; T Down; S C Dyer; T Eyre; S Fitzgerald; J Fernandez-Banet; S Gräf; S Haider; M Hammond; R Holland; K L Howe; K Howe; N Johnson; A Jenkinson; A Kähäri; D Keefe; F Kokocinski; E Kulesha; D Lawson; I Longden; K Megy; P Meidl; B Overduin; A Parker; B Pritchard; A Prlic; S Rice; D Rios; M Schuster; I Sealy; G Slater; D Smedley; G Spudich; S Trevanion; A J Vilella; J Vogel; S White; M Wood; E Birney; T Cox; V Curwen; R Durbin; X M Fernandez-Suarez; J Herrero; T J P Hubbard; A Kasprzyk; G Proctor; J Smith; A Ureta-Vidal; S Searle
Journal:  Nucleic Acids Res       Date:  2007-11-13       Impact factor: 16.971

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  13 in total

1.  A transcript finishing initiative for closing gaps in the human transcriptome.

Authors:  Mari Cleide Sogayar; Anamaria A Camargo; Fabiana Bettoni; Dirce Maria Carraro; Lilian C Pires; Raphael B Parmigiani; Elisa N Ferreira; Eloísa de Sá Moreira; Maria do Rosário D de O Latorre; Andrew J G Simpson; Luciana Oliveira Cruz; Theri Leica Degaki; Fernanda Festa; Katlin B Massirer; Mari C Sogayar; Fernando Camargo Filho; Luiz Paulo Camargo; Marco A V Cunha; Sandro J De Souza; Milton Faria; Silvana Giuliatti; Leonardo Kopp; Paulo S L de Oliveira; Paulo B Paiva; Anderson A Pereira; Daniel G Pinheiro; Renato D Puga; Jorge Estefano S de Souza; Dulcineia M Albuquerque; Luís E C Andrade; Gilson S Baia; Marcelo R S Briones; Ana M S Cavaleiro-Luna; Janete M Cerutti; Fernando F Costa; Eugenia Costanzi-Strauss; Enilza M Espreafico; Adriana C Ferrasi; Emer S Ferro; Maria A H Z Fortes; Joelma R F Furchi; Daniel Giannella-Neto; Gustavo H Goldman; Maria H S Goldman; Arthur Gruber; Gustavo S Guimarães; Christine Hackel; Flavio Henrique-Silva; Edna T Kimura; Suzana G Leoni; Cláudia Macedo; Bettina Malnic; Carina V Manzini B; Suely K N Marie; Nilce M Martinez-Rossi; Marcelo Menossi; Elisabete C Miracca; Maria A Nagai; Francisco G Nobrega; Marina P Nobrega; Sueli M Oba-Shinjo; Márika K Oliveira; Guilherme M Orabona; Audrey Y Otsuka; Maria L Paço-Larson; Beatriz M C Paixão; Jose R C Pandolfi; Maria I M C Pardini; Maria R Passos Bueno; Geraldo A S Passos; Joao B Pesquero; Juliana G Pessoa; Paula Rahal; Cláudia A Rainho; Caroline P Reis; Tatiana I Ricca; Vanderlei Rodrigues; Silvia R Rogatto; Camila M Romano; Janaína G Romeiro; Antonio Rossi; Renata G Sá; Magaly M Sales; Simone C Sant'Anna; Patrícia L Santarosa; Fernando Segato; Wilson A Silva; Ismael D C G Silva; Neusa P Silva; Andrea Soares-Costa; Maria F Sonati; Bryan E Strauss; Eloiza H Tajara; Sandro R Valentini; Fabiola E Villanova; Laura S Ward; Dalila L Zanette
Journal:  Genome Res       Date:  2004-06-14       Impact factor: 9.043

2.  Gene-expression variation within and among human populations.

Authors:  John D Storey; Jennifer Madeoy; Jeanna L Strout; Mark Wurfel; James Ronald; Joshua M Akey
Journal:  Am J Hum Genet       Date:  2007-01-11       Impact factor: 11.025

3.  The UCSC Genome Browser.

Authors:  Donna Karolchik; Angie S Hinrichs; W James Kent
Journal:  Curr Protoc Hum Genet       Date:  2011-10

4.  Deletions in chromosome 6p22.3-p24.3, including ATXN1, are associated with developmental delay and autism spectrum disorders.

Authors:  Patrícia Bs Celestino-Soper; Cindy Skinner; Richard Schroer; Patricia Eng; Jayant Shenai; Malgorzata Mj Nowaczyk; Deborah Terespolsky; Donna Cushing; Gayle S Patel; Ladonna Immken; Alecia Willis; Joanna Wiszniewska; Reuben Matalon; Jill A Rosenfeld; Roger E Stevenson; Sung-Hae L Kang; Sau Wai Cheung; Arthur L Beaudet; Pawel Stankiewicz
Journal:  Mol Cytogenet       Date:  2012-04-05       Impact factor: 2.009

5.  Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes.

Authors:  Adam Siepel; Gill Bejerano; Jakob S Pedersen; Angie S Hinrichs; Minmei Hou; Kate Rosenbloom; Hiram Clawson; John Spieth; Ladeana W Hillier; Stephen Richards; George M Weinstock; Richard K Wilson; Richard A Gibbs; W James Kent; Webb Miller; David Haussler
Journal:  Genome Res       Date:  2005-07-15       Impact factor: 9.043

6.  Testing two models describing how methylome-wide studies in blood are informative for psychiatric conditions.

Authors:  Karolina A Aberg; Lin Y Xie; Joseph L McClay; Srilaxmi Nerella; Sarah Vunck; Sarah Snider; Patrick M Beardsley; Edwin J C G van den Oord
Journal:  Epigenomics       Date:  2013-08       Impact factor: 4.778

7.  Pash: efficient genome-scale sequence anchoring by Positional Hashing.

Authors:  Ken J Kalafus; Andrew R Jackson; Aleksandar Milosavljevic
Journal:  Genome Res       Date:  2004-04       Impact factor: 9.043

8.  Hypogonadotropic hypogonadism presenting with arhinia: a case report.

Authors:  Jeanie B Tryggestad; Shibo Li; Steven D Chernausek
Journal:  J Med Case Rep       Date:  2013-02-22

9.  On the Wegener granulomatosis associated region on chromosome 6p21.3.

Authors:  Paweł Szyld; Peter Jagiello; Elena Csernok; Wolfgang L Gross; Joerg T Epplen
Journal:  BMC Med Genet       Date:  2006-03-09       Impact factor: 2.103

10.  Hotspots of mammalian chromosomal evolution.

Authors:  Jeffrey A Bailey; Robert Baertsch; W James Kent; David Haussler; Evan E Eichler
Journal:  Genome Biol       Date:  2004-03-08       Impact factor: 13.583

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