Literature DB >> 20025306

Computing absolute free energies of disordered structures by molecular simulation.

T Schilling1, F Schmid.   

Abstract

We present a Monte Carlo simulation technique by which the free energy of disordered systems can be computed directly. It is based on thermodynamic integration. The central idea is to construct an analytically solvable reference system from a configuration which is representative for the state of interest. The method can be applied to lattice models (e.g., the Ising model) as well as off-lattice molecular models. We focus mainly on the more challenging off-lattice case. We propose a Monte Carlo algorithm, by which the thermodynamic integration path can be sampled efficiently. At the examples of the hard sphere liquid and a hard disk solid with a defect, we discuss several properties of the approach.

Entities:  

Year:  2009        PMID: 20025306     DOI: 10.1063/1.3274951

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Entropy-driven formation of large icosahedral colloidal clusters by spherical confinement.

Authors:  Bart de Nijs; Simone Dussi; Frank Smallenburg; Johannes D Meeldijk; Dirk J Groenendijk; Laura Filion; Arnout Imhof; Alfons van Blaaderen; Marjolein Dijkstra
Journal:  Nat Mater       Date:  2014-08-31       Impact factor: 43.841

2.  Computing Absolute Free Energy with Deep Generative Models.

Authors:  Xinqiang Ding; Bin Zhang
Journal:  J Phys Chem B       Date:  2020-11-03       Impact factor: 2.991

3.  Magic number colloidal clusters as minimum free energy structures.

Authors:  Junwei Wang; Chrameh Fru Mbah; Thomas Przybilla; Benjamin Apeleo Zubiri; Erdmann Spiecker; Michael Engel; Nicolas Vogel
Journal:  Nat Commun       Date:  2018-12-10       Impact factor: 14.919

4.  Challenges in the use of atomistic simulations to predict solubilities of drug-like molecules.

Authors:  Guilherme Duarte Ramos Matos; David L Mobley
Journal:  F1000Res       Date:  2018-05-31
  4 in total

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