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Literature DB >> 20023104

Composition of the landfill microbial community as determined by application of domain- and group-specific 16S and 18S rRNA-targeted oligonucleotide probes.

James E McDonald¹, Heather E Allison, Alan J McCarthy.

Abstract

The microbial community composition of colonized cotton and leachate samples from a landfill was quantified using small subunit (SSU) rRNA probes (quantitative rRNA hybridization). Relative quantification of bacteria, eukaryotes, and archaea revealed variations in the landfill microbial community between samples from different areas of the landfill site and indicated the presence of potentially novel archaea. Anaerobic fungi were quantified in rumen fluid samples but were not sufficiently abundant for direct detection in the landfill samples.

Mesh：

Substances：

Year: 2009 PMID： 20023104 PMCID： PMC2820961 DOI： 10.1128/AEM.01783-09

Source DB: PubMed Journal: Appl Environ Microbiol ISSN： 0099-2240 Impact factor: 4.792

25 in total

Review 1. A renaissance for the pioneering 16S rRNA gene.

Authors: Susannah G Tringe; Philip Hugenholtz
Journal: Curr Opin Microbiol Date: 2008-10-08 Impact factor: 7.934

2. Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh.

Authors: M A Munson; D B Nedwell; T M Embley
Journal: Appl Environ Microbiol Date: 1997-12 Impact factor: 4.792

3. Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria.

Authors: K Daly; R J Sharp; A J McCarthy
Journal: Microbiology Date: 2000-07 Impact factor: 2.777

4. Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes.

Authors: James E McDonald; Alexandre B de Menezes; Heather E Allison; Alan J McCarthy
Journal: Appl Environ Microbiol Date: 2009-06-05 Impact factor: 4.792

5. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.

Authors: M D Collins; P A Lawson; A Willems; J J Cordoba; J Fernandez-Garayzabal; P Garcia; J Cai; H Hippe; J A Farrow
Journal: Int J Syst Bacteriol Date: 1994-10

6. Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

Authors: James E McDonald; Robert J Lockhart; Michael J Cox; Heather E Allison; Alan J McCarthy
Journal: Environ Microbiol Date: 2008-02-05 Impact factor: 5.491

7. The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production.

Authors: A A Odenyo; R I Mackie; D A Stahl; B A White
Journal: Appl Environ Microbiol Date: 1994-10 Impact factor: 4.792

8. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

Authors: Todd Z DeSantis; Eoin L Brodie; Jordan P Moberg; Ingrid X Zubieta; Yvette M Piceno; Gary L Andersen
Journal: Microb Ecol Date: 2007-03-02 Impact factor: 4.192

6. Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages.

Authors: Lerato Sekhohola-Dlamini; Ramganesh Selvarajan; Henry Joseph Odour Ogola; Memory Tekere
Journal: Microbiologyopen Date: 2020-12-12 Impact factor: 3.904

6 in total

Composition of the landfill microbial community as determined by application of domain- and group-specific 16S and 18S rRNA-targeted oligonucleotide probes.

Review 1. A renaissance for the pioneering 16S rRNA gene.

2. Phylogenetic diversity of Archaea in sediment samples from a coastal salt marsh.

3. Development of oligonucleotide probes and PCR primers for detecting phylogenetic subgroups of sulfate-reducing bacteria.

4. Molecular biological detection and quantification of novel Fibrobacter populations in freshwater lakes.

5. The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations.

6. Detection of novel Fibrobacter populations in landfill sites and determination of their relative abundance via quantitative PCR.

7. The use of 16S rRNA-targeted oligonucleotide probes to study competition between ruminal fibrolytic bacteria: development of probes for Ruminococcus species and evidence for bacteriocin production.

8. High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment.

9. probeBase--an online resource for rRNA-targeted oligonucleotide probes: new features 2007.

10. The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.

1. A preliminary report of indigenous fungal isolates from contaminated municipal solid waste site in India.

2. Eukaryotic community composition and dynamics during solid waste decomposition.

3. Bioremediation of Landfill Leachate with Fungi: Autochthonous vs. Allochthonous Strains.

4. Delineating the Drivers and Functionality of Methanogenic Niches within an Arid Landfill.

5. Municipal Solid Waste Landfills Harbor Distinct Microbiomes.

6. Community diversity metrics, interactions, and metabolic functions of bacteria associated with municipal solid waste landfills at different maturation stages.