| Literature DB >> 20022295 |
Kai Wang1, Wei Wang, Huajie Yan, Peijun Ren, Jing Zhang, Jun Shen, Vincent Deubel.
Abstract
BACKGROUND: Human bocavirus (HBoV), a recently discovered virus, is prevalent among children with respiratory tract infection throughout the world. Co-infection was frequently found in HBoV-positive patients. Thus, whether HBoV is responsible for the respiratory disease is still arguable.Entities:
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Year: 2010 PMID: 20022295 PMCID: PMC7172221 DOI: 10.1016/j.jcv.2009.11.015
Source DB: PubMed Journal: J Clin Virol ISSN: 1386-6532 Impact factor: 3.168
HBoV primers and probe used in viral genome amplification.
| Gene | Amplicon | Forward primer | Reverse primer | Size (bp) | Reference |
|---|---|---|---|---|---|
| NP1 for real-time PCR | NP-1 | 5′-AGAGGCTCGGGCTCATATCA-3′ | 5′-CACTTGGTCTGAGGTCTTCGAA-3′ | 81 | |
| Probe | 5′ FAM-AGGACCACCCAATCARCCACCTATCGTCT-BHQ1 3′ | ||||
| NS1 for conventional RT-PCR | NS-1 | 5′-TATGGCCAAGGCAATCGTCCAAG-3′ | 5′-GCCGCGTGAACATGAGAAACAG-3′ | 245 | |
| VP1 for sequence | VP1 | 5′-CCACTAGTATGCCTCCAATTAAGAGACAGC-3′ | 5′-CCTCTAGATTACAACACTTTATTGATGTTTGT-3′ | 2016 | |
| VP2 | VP2-P1 | 5′-CCCAAGCTTGCATGTCTGACACTGACATTCAA-3′ | 5′-CCGCTCGAGTTAATCACAAAAGATGTGAACGC-3′ | 480 | |
| VP2 | VP2-P2 | 5′-CCCAAGCTTGCATG CAAATACTTTCAAATGGTGCT-3′ | 5′-CCGCTCGAGTTATGTGCTTCCGTTTTGTCTTAT-3′ | 435 | |
| VP2 | VP2-P3 | 5′-CCCAAGCTTGCATGCTAATGTTTAATCCAAAAGTC-3′ | 5′-CCGCTCGAGTTA TCTGGTGATAGGAAATCTGTC-3′ | 465 | |
| VP2 | VP2-P4 | 5′-CCCAAGCTTGCATGCTATACAAAGGAAACCAAACC-3′ | 5′-CCGCTCGAGTTACAACACTTTATTGATGTTTG-3′ | 474 | |
Multiple viral infections in HBoV-positive samples.
| Two virus infection ( | Three virus infection (6 cases) | Four virus infection (1 case) |
|---|---|---|
| RSV (10) | PIV1/HRV | RSV/HRV/IBV |
| HRV (4) | RSV/HRV | |
| IAV/IBV (5/7) | RSV/HMPV | |
| HMPV (3) | RSV/229E | |
| ADV (5) | PIV4/HRV | |
| HCoV-NL63 (1) | RSV/ADV | |
| PIV1/3 (4/3) |
RSV: Respiratory syncytial virus; HRV: human rhinovirus; IAV: influenza A virus; IBV: influenza B virus; HMPV: human metapneumovirus; ADV: adenovirus; HCoV: human coronaviruses (including 229E, NL63); PIV1–4: parainfluenza virus 1–4.
Clinical diagnosis of HBoV-positive children.
| Clinical diagnosis | Total samples | HBoV-positive | Percentage of HBoV-positive/total samples |
|---|---|---|---|
| Acute laryngitis | 58 | 11 | 19.0% |
| Bronchitis | 479 | 26 | 5.4% |
| Bronchiolitis | 51 | 11 | 21.6% |
| Bronchopneumonia | 187 | 39 | 20.9% |
| Asthma | 42 | 9 | 21.4% |
| Total | 817 | 96 | 11.8% |
Fig. 1Phylogenetic tree of HBoV based on the VP1 gene sequence. Sample numbers in italic were sequenced in this study, the first two numbers represent the month and the next two numbers the date of sample collection. Samples underlined were the two first original samples identified in Sweden, each corresponding to one genotype. All the field strains we found were more similar to ST2 (DQ000496). CN: China, JP: Japan, Thai: Thailand, US: USA, Germ: Germany, HK: Hongkong. VP1 gene sequences from HBoV field samples of this study are given nos. GQ403967–GQ403983 in Genbank.
Fig. 2Immunoblot assay for detection of antibodies via VP2 and four fragments of VP2. (a) VP2-expressing recombinant baculovirus-infected cells and purified VP2 fragments were subjected to SDS-PAGE and Coomassie blue staining. (b) HBoV proteins were analyzed by Western blot using an IgM-positive patient serum (dilution: 1:50). (c) HBoV proteins were analyzed by Western blot using an IgG-positive patient serum (dilution 1:100). M: Marker (kDa).
Antibody responses in sera (via Western blot) compared with viral loads in HBoV-positive samples.
| Viral load/Ab response | Total samples | IgM no. (%) | IgG no. (%) | Antibodies no. (%) |
|---|---|---|---|---|
| Viremia | 21 | 15 (71.4%) | 11 (52.4%) | 19 (90.5%) |
| With high viral load (>104 copies/ml) | 22 | 16 (72.7%) | 13 (59.1%) | 19 (86.4%) |
| Single HBoV infection | 36 | 26 (72.2%) | 19 (52.8%) | 33 (91.7%) |
| Multiple viral infections | 43 | 19 (44.2%) | 21 (48.8%) | 30 (69.8%) |
| Total HBoV-positive | 79 | 44 (55.7%) | 40 (50.6%) | 63 (79.7%) |
Fig. 3Anti-HBoV IgG-positive individuals categorized according to age group.
Persistent HBoV shedding in patients, with the interval between two visits.
| Patient ( | Age | HBoV genome (copies/ml of specimens) | Antibody | Co-infection | ||||
|---|---|---|---|---|---|---|---|---|
| Days interval | Nose swab† | Throat swab | Serum | Urine | IgG | IgM | Virus | |
| R3071126003 | 17 m/F | 3.2 × 105 | 3.2 × 106 | 3.0 × 104 | NA | − | +++ | |
| 14 days apart | 0 | 1.2 × 102 | 3.3 × 102 | 2.3 × 103 | + | ++ | ||
| R3071203001 | 12 m/M | 2.3 × 104 | 4.6 × 104 | 9.6 × 104 | NA | + | ++ | |
| 14 days apart | 5.0 × 103 | 9.0 × 102 | 1.4 × 103 | 0 | +++ | ++ | HRV | |
| R3080218002 | 10 m/M | 4.4 × 102 | 2.7 × 102 | 0 | NA | − | + | |
| 14 days apart | 0 | 0 | 1.7 × 102 | 0 | + | + | ||
| R3080218005 | 5 y/M | 6.1 × 102 | 2.9 × 102 | 0 | NA | + | ++ | IAV |
| 15 days apart | 0 | 2.1 × 102 | 5.3 × 102 | 0 | + | + | AdV | |
| R3080303002 | 13 m/M | 0 | 2.4 × 102 | 0 | NA | − | − | HMPV |
| 8 days apart | 0 | 1.2 × 102 | 0 | 5.3 × 102 | − | + | ||
| R3080303004 | 5 y/M | 2.2 × 102 | 2.9 × 103 | 0 | NA | − | ++ | |
| 20 days apart | 4.9 × 102 | 4.4 × 102 | 0 | 0 | − | + | ||
| R3080320004 | 5 y/M | 0 | 4.6 × 102 | 7.9 × 102 | NA | − | − | |
| 31 days apart | 1.5 × 103 | 2.4 × 102 | 0 | 2.0 × 103 | + | + | HRV | |
| R3080508002 | 7 m/M | 1.6 × 102 | 3.4 × 102 | 0 | NA | + | + | HRV |
| 26 days apart | 1.4 × 102 | 4.7 × 102 | 0 | 0 | + | − | ||
| R3080508005 | 9 m/M | 2.9 × 102 | 1.9 × 102 | 0 | NA | − | − | PIV4/HRV |
| 26 days apart | 0 | 0 | 0 | 0 | ++ | − | ||
| R3080522002 | 5 y/M | 1.0 × 102 | 7.5 × 102 | 0 | NA | − | + | |
| 12 days apart | 6.0 × 102 | 0 | 0 | 0 | + | ++ | ||
| R3080811001 | 11 m/M | 2.5 × 105 | 2.4 × 105 | 5.6 × 104 | NA | − | + | |
| 20 days apart | 0 | 0 | 0 | 0 | + | ++ | ||
| R3080825005 | 2 y/M | 5.0 × 106 | 4.5 × 105 | 7.5 × 104 | NA | − | + | |
| 17 days apart | 5.4 × 102 | 4.6 × 102 | 1.2 × 103 | 0 | + | + | ||
NA: Not available.
m, Month; y, year.
F, Female; M, male.
HBoV load was normalized by GAPDH.
Fig. 4The comparison of viral load in nasal and throat swabs. The points crossing the y axis indicate that nasal swabs were HBoV-negative. HBoV load was normalized by GAPDH.