Literature DB >> 20010696

Transduction of RNA-directed DNA methylation signals to repressive histone marks in Arabidopsis thaliana.

Hisataka Numa1, Jong-Myong Kim, Akihiro Matsui, Yukio Kurihara, Taeko Morosawa, Junko Ishida, Yoshiki Mochizuki, Hiroshi Kimura, Kazuo Shinozaki, Tetsuro Toyoda, Motoaki Seki, Manabu Yoshikawa, Yoshiki Habu.   

Abstract

RNA-directed modification of histones is essential for the maintenance of heterochromatin in higher eukaryotes. In plants, cytosine methylation is an additional factor regulating inactive chromatin, but the mechanisms regulating the coexistence of cytosine methylation and repressive histone modification remain obscure. In this study, we analysed the mechanism of gene silencing mediated by MORPHEUS' MOLECULE1 (MOM1) of Arabidopsis thaliana. Transcript profiling revealed that the majority of up-regulated loci in mom1 carry sequences related to transposons and homologous to the 24-nt siRNAs accumulated in wild-type plants that are the hallmarks of RNA-directed DNA methylation (RdDM). Analysis of a single-copy gene, SUPPRESSOR OF drm1 drm2 cmt3 (SDC), revealed that mom1 activates SDC with concomitant reduction of di-methylated histone H3 lysine 9 (H3K9me2) at the tandem repeats in the promoter region without changes in siRNA accumulation and cytosine methylation. The reduction of H3K9me2 is not observed in regions flanking the tandem repeats. The results suggest that MOM1 transduces RdDM signals to repressive histone modification in the core region of RdDM.

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Year:  2009        PMID: 20010696      PMCID: PMC2824457          DOI: 10.1038/emboj.2009.374

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  57 in total

1.  Endogenous targets of transcriptional gene silencing in Arabidopsis.

Authors:  A Steimer; P Amedeo; K Afsar; P Fransz; O Mittelsten Scheid; J Paszkowski
Journal:  Plant Cell       Date:  2000-07       Impact factor: 11.277

2.  Rolling-circle transposons in eukaryotes.

Authors:  V V Kapitonov; J Jurka
Journal:  Proc Natl Acad Sci U S A       Date:  2001-07-10       Impact factor: 11.205

3.  Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation.

Authors:  Yasuyuki Onodera; Jeremy R Haag; Thomas Ream; Pedro Costa Nunes; Olga Pontes; Craig S Pikaard
Journal:  Cell       Date:  2005-03-11       Impact factor: 41.582

4.  Disruption of the plant gene MOM releases transcriptional silencing of methylated genes.

Authors:  P Amedeo; Y Habu; K Afsar; O Mittelsten Scheid; J Paszkowski
Journal:  Nature       Date:  2000-05-11       Impact factor: 49.962

5.  Molecular paleontology of transposable elements from Arabidopsis thaliana.

Authors:  V V Kapitonov; J Jurka
Journal:  Genetica       Date:  1999       Impact factor: 1.082

6.  The complete sequence of a heterochromatic island from a higher eukaryote. The Cold Spring Harbor Laboratory, Washington University Genome Sequencing Center, and PE Biosystems Arabidopsis Sequencing Consortium.

Authors: 
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

7.  Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region.

Authors:  P F Fransz; S Armstrong; J H de Jong; L D Parnell; C van Drunen; C Dean; P Zabel; T Bisseling; G H Jones
Journal:  Cell       Date:  2000-02-04       Impact factor: 41.582

8.  Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase.

Authors:  James P Jackson; Anders M Lindroth; Xiaofeng Cao; Steven E Jacobsen
Journal:  Nature       Date:  2002-03-17       Impact factor: 49.962

9.  Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation.

Authors:  Lianna Johnson; Xiaofeng Cao; Steven Jacobsen
Journal:  Curr Biol       Date:  2002-08-20       Impact factor: 10.834

10.  Divergent evolution of CHD3 proteins resulted in MOM1 refining epigenetic control in vascular plants.

Authors:  Marian Caikovski; Chotika Yokthongwattana; Yoshiki Habu; Taisuke Nishimura; Olivier Mathieu; Jerzy Paszkowski
Journal:  PLoS Genet       Date:  2008-08-22       Impact factor: 5.917

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  23 in total

1.  Locus-specific dependency of endogenous silent loci on MOM1 and non-CG methylation in Arabidopsis thaliana.

Authors:  Yoshiki Habu; Manabu Yoshikawa
Journal:  Plant Signal Behav       Date:  2010-06-01

2.  Transcriptional silencing induced by Arabidopsis T-DNA mutants is associated with 35S promoter siRNAs and requires genes involved in siRNA-mediated chromatin silencing.

Authors:  Sizolwenkosi Mlotshwa; Gail J Pruss; Zhihuan Gao; Nomathamsanqa L Mgutshini; Junjie Li; Xuemei Chen; Lewis H Bowman; Vicki Vance
Journal:  Plant J       Date:  2010-10-08       Impact factor: 6.417

3.  An atypical component of RNA-directed DNA methylation machinery has both DNA methylation-dependent and -independent roles in locus-specific transcriptional gene silencing.

Authors:  Jun Liu; Ge Bai; Cuijun Zhang; Wei Chen; Jinxing Zhou; Suwei Zhang; Qing Chen; Xin Deng; Xin-Jian He; Jian-Kang Zhu
Journal:  Cell Res       Date:  2011-11-08       Impact factor: 25.617

4.  Silencing: new faces of Morpheus' molecule.

Authors:  Andrzej T Wierzbicki
Journal:  EMBO J       Date:  2010-01-20       Impact factor: 11.598

5.  SUPPRESSOR OF FRIGIDA (SUF4) Supports Gamete Fusion via Regulating Arabidopsis EC1 Gene Expression.

Authors:  Francesca Resentini; Philipp Cyprys; Joshua G Steffen; Svenja Alter; Piero Morandini; Chiara Mizzotti; Alan Lloyd; Gary N Drews; Thomas Dresselhaus; Lucia Colombo; Stefanie Sprunck; Simona Masiero
Journal:  Plant Physiol       Date:  2016-12-05       Impact factor: 8.340

6.  Parental epigenetic asymmetry of PRC2-mediated histone modifications in the Arabidopsis endosperm.

Authors:  Jordi Moreno-Romero; Hua Jiang; Juan Santos-González; Claudia Köhler
Journal:  EMBO J       Date:  2016-04-25       Impact factor: 11.598

7.  HISTONE DEACETYLASE6 Controls Gene Expression Patterning and DNA Methylation-Independent Euchromatic Silencing.

Authors:  Emilija Hristova; Kateryna Fal; Laurin Klemme; David Windels; Etienne Bucher
Journal:  Plant Physiol       Date:  2015-04-27       Impact factor: 8.340

8.  Stress-induced activation of heterochromatic transcription.

Authors:  Mireille Tittel-Elmer; Etienne Bucher; Larissa Broger; Olivier Mathieu; Jerzy Paszkowski; Isabelle Vaillant
Journal:  PLoS Genet       Date:  2010-10-28       Impact factor: 5.917

9.  RNA-directed DNA methylation regulates parental genomic imprinting at several loci in Arabidopsis.

Authors:  Thiet Minh Vu; Miyuki Nakamura; Joseph P Calarco; Daichi Susaki; Pei Qi Lim; Tetsu Kinoshita; Tetsuya Higashiyama; Robert A Martienssen; Frédéric Berger
Journal:  Development       Date:  2013-06-12       Impact factor: 6.868

10.  The SUMO E3 Ligase-Like Proteins PIAL1 and PIAL2 Interact with MOM1 and Form a Novel Complex Required for Transcriptional Silencing.

Authors:  Yong-Feng Han; Qiu-Yuan Zhao; Liang-Liang Dang; Yu-Xi Luo; Shan-Shan Chen; Chang-Rong Shao; Huan-Wei Huang; Yong-Qiang Li; Lin Li; Tao Cai; She Chen; Xin-Jian He
Journal:  Plant Cell       Date:  2016-04-25       Impact factor: 11.277

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