Literature DB >> 20010362

Capturing all disease-causing mutations for clinical and research use: toward an effortless system for the Human Variome Project.

Richard G H Cotton1, Aida I Al Aqeel, Fahd Al-Mulla, Paola Carrera, Mireille Claustres, Rosemary Ekong, Valentine J Hyland, Finlay A Macrae, Makia J Marafie, Mark H Paalman, George P Patrinos, Ming Qi, Rajkumar S Ramesar, Rodney J Scott, Rolf H Sijmons, María-Jesús Sobrido, Mauno Vihinen.   

Abstract

The collection of genetic variants that cause inherited disease (causative mutation) has occurred for decades albeit in an ad hoc way, for research and clinical purposes. More recently, the access to collections of mutations causing specific diseases has become essential for appropriate genetic health care. Because information has accumulated, it has become apparent that there are many gaps in our ability to correctly annotate all the changes that are being identified at ever increasing rates. The Human Variome Project (www.humanvariomeproject.org) was initiated to facilitate integrated and systematic collection and access to this data. This manuscript discusses how collection of such data may be facilitated through new software and strategies in the clinical genetics and diagnostic laboratory communities.

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Year:  2009        PMID: 20010362     DOI: 10.1097/GIM.0b013e3181c371c5

Source DB:  PubMed          Journal:  Genet Med        ISSN: 1098-3600            Impact factor:   8.822


  13 in total

1.  Call for participation in the neurogenetics consortium within the Human Variome Project.

Authors:  Andrea Haworth; Lars Bertram; Paola Carrera; Joanna L Elson; Corey D Braastad; Diane W Cox; Marc Cruts; Johann T den Dunnen; Matthew J Farrer; John K Fink; Sherifa A Hamed; Henry Houlden; Dennis R Johnson; Karen Nuytemans; Francesc Palau; Dipa L Raja Rayan; Peter N Robinson; Antonio Salas; Birgitt Schüle; Mary G Sweeney; Michael O Woods; Jorge Amigo; Richard G H Cotton; Maria-Jesus Sobrido
Journal:  Neurogenetics       Date:  2011-06-01       Impact factor: 2.660

2.  Mutation (variation) databases and registries: a rationale for coordination of efforts.

Authors:  Arleen D Auerbach; John Burn; Jean-Jacques Cassiman; Mireille Claustres; Richard G H Cotton; Garry Cutting; Johan T den Dunnen; Mona El-Ruby; Aida Falcon Vargas; Marc S Greenblatt; Finlay Macrae; Yoichi Matsubara; David L Rimoin; Mauno Vihinen; Christine Van Broeckhoven
Journal:  Nat Rev Genet       Date:  2011-10-25       Impact factor: 53.242

3.  Reporting of Genetic Variants by Diagnostic Laboratories and other Centres.

Authors:  John-Paul Plazzer; Johan T den Dunnen; Timothy Smith; Finlay Macrae; Richard G Cotton
Journal:  Clin Biochem Rev       Date:  2012-02

4.  Consensus: a framework for evaluation of uncertain gene variants in laboratory test reporting.

Authors:  David K Crockett; Perry G Ridge; Andrew R Wilson; Elaine Lyon; Marc S Williams; Scott P Narus; Julio C Facelli; Joyce A Mitchell
Journal:  Genome Med       Date:  2012-05-28       Impact factor: 11.117

5.  Human Variome Project Quality Assessment Criteria for Variation Databases.

Authors:  Mauno Vihinen; John M Hancock; Donna R Maglott; Melissa J Landrum; Gerard C P Schaafsma; Peter Taschner
Journal:  Hum Mutat       Date:  2016-03-21       Impact factor: 4.878

6.  Utility of gene-specific algorithms for predicting pathogenicity of uncertain gene variants.

Authors:  David K Crockett; Elaine Lyon; Marc S Williams; Scott P Narus; Julio C Facelli; Joyce A Mitchell
Journal:  J Am Med Inform Assoc       Date:  2011-10-28       Impact factor: 4.497

7.  Towards an Ecology of Collective Innovation: Human Variome Project (HVP), Rare Disease Consortium for Autosomal Loci (RaDiCAL) and Data-Enabled Life Sciences Alliance (DELSA).

Authors:  Vural Ozdemir; David S Rosenblatt; Louise Warnich; Sanjeeva Srivastava; Ghazi O Tadmouri; Ramy K Aziz; Panga Jaipal Reddy; Aresha Manamperi; Edward S Dove; Yann Joly; Ma'n H Zawati; Candan Hızel; Yasemin Yazan; Leela John; Emmanuelle Vaast; Adam S Ptolemy; Samer A Faraj; Eugene Kolker; Richard G H Cotton
Journal:  Curr Pharmacogenomics Person Med       Date:  2011-12-01

Review 8.  Next-generation sequencing diagnostics for neurological diseases/disorders: from a clinical perspective.

Authors:  Jia Nee Foo; Jianjun Liu; Eng-King Tan
Journal:  Hum Genet       Date:  2013-03-23       Impact factor: 4.132

9.  International Porphyria Molecular Diagnostic Collaborative: an evidence-based database of verified pathogenic and benign variants for the porphyrias.

Authors:  Brenden Chen; Sharon Whatley; Michael Badminton; Aasne K Aarsand; Karl E Anderson; D Montgomery Bissell; Herbert L Bonkovsky; Maria D Cappellini; Ylva Floderus; Edith C H Friesema; Laurent Gouya; Pauline Harper; Raili Kauppinen; Yonina Loskove; Pavel Martásek; John D Phillips; Hervé Puy; Sverre Sandberg; Caroline Schmitt; Jordi To-Figueras; Yedidyah Weiss; Makiko Yasuda; Jean-Charles Deybach; Robert J Desnick
Journal:  Genet Med       Date:  2019-05-10       Impact factor: 8.822

10.  Recommendations for genetic variation data capture in developing countries to ensure a comprehensive worldwide data collection.

Authors:  George P Patrinos; Jumana Al Aama; Aida Al Aqeel; Fahd Al-Mulla; Joseph Borg; Andrew Devereux; Alex E Felice; Finlay Macrae; Makia J Marafie; Michael B Petersen; Ming Qi; Rajkumar S Ramesar; Joel Zlotogora; Richard G H Cotton
Journal:  Hum Mutat       Date:  2011-01       Impact factor: 4.878

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