Literature DB >> 20008414

On the origin of chaos in autonomous Boolean networks.

Hugo L D de S Cavalcante1, Daniel J Gauthier, Joshua E S Socolar, Rui Zhang.   

Abstract

We undertake a systematic study of the dynamics of Boolean networks to determine the origin of chaos observed in recent experiments. Networks with nodes consisting of ideal logic gates are known to display either steady states, periodic behaviour or an ultraviolet catastrophe where the number of logic-transition events circulating in the network per unit time grows as a power law. In an experiment, the non-ideal behaviour of the logic gates prevents the ultraviolet catastrophe and may lead to deterministic chaos. We identify certain non-ideal features of real logic gates that enable chaos in experimental networks. We find that short-pulse rejection and asymmetry between the logic states tend to engender periodic behaviour, at least for the simplest networks. On the other hand, we find that a memory effect termed 'degradation' can generate chaos. Our results strongly suggest that deterministic chaos can be expected in a large class of experimental Boolean-like networks. Such devices may find application in a variety of technologies requiring fast complex waveforms or flat power spectra, and can be used as a test-bed for fundamental studies of real-world Boolean-like networks. This journal is
© 2010 The Royal Society

Mesh:

Year:  2010        PMID: 20008414     DOI: 10.1098/rsta.2009.0235

Source DB:  PubMed          Journal:  Philos Trans A Math Phys Eng Sci        ISSN: 1364-503X            Impact factor:   4.226


  5 in total

1.  Causal structure of oscillations in gene regulatory networks: Boolean analysis of ordinary differential equation attractors.

Authors:  Mengyang Sun; Xianrui Cheng; Joshua E S Socolar
Journal:  Chaos       Date:  2013-06       Impact factor: 3.642

2.  Autonomous Boolean modelling of developmental gene regulatory networks.

Authors:  Xianrui Cheng; Mengyang Sun; Joshua E S Socolar
Journal:  J R Soc Interface       Date:  2012-10-03       Impact factor: 4.118

3.  Qualitative models and experimental investigation of chaotic NOR gates and set/reset flip-flops.

Authors:  Aminur Rahman; Ian Jordan; Denis Blackmore
Journal:  Proc Math Phys Eng Sci       Date:  2018-01-31       Impact factor: 2.704

4.  Reliability of transcriptional cycles and the yeast cell-cycle oscillator.

Authors:  Volkan Sevim; Xinwei Gong; Joshua E S Socolar
Journal:  PLoS Comput Biol       Date:  2010-07-08       Impact factor: 4.475

5.  Parameter-less approaches for interpreting dynamic cellular response.

Authors:  Kumar Selvarajoo
Journal:  J Biol Eng       Date:  2014-08-19       Impact factor: 4.355

  5 in total

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