SUMMARY: We make the PCIT algorithm, used for detecting meaningful gene-gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script. AVAILABILITY AND IMPLEMENTATION: Source code and binaries freely available (under GPL-3) for download via CRAN at http://cran.r-project.org/package=PCIT, implemented in R and supported on Linux and MS Windows.
SUMMARY: We make the PCIT algorithm, used for detecting meaningful gene-gene associations in co-expression networks, available as an R package. Automatic detection of a suitable parallel environment is used such that scripts are portable between parallel and non-parallel environments with no modification of the script. AVAILABILITY AND IMPLEMENTATION: Source code and binaries freely available (under GPL-3) for download via CRAN at http://cran.r-project.org/package=PCIT, implemented in R and supported on Linux and MS Windows.
Authors: Quan Gu; Shivashankar H Nagaraj; Nicholas J Hudson; Brian P Dalrymple; Antonio Reverter Journal: BMC Genomics Date: 2011-01-12 Impact factor: 3.969
Authors: Jessica A Palmer; Alan M Smith; Vitalina Gryshkova; Elizabeth L R Donley; Jean-Pierre Valentin; Robert E Burrier Journal: Toxicol Sci Date: 2020-04-01 Impact factor: 4.849
Authors: Wei Sun; Nicholas J Hudson; Antonio Reverter; Ashley J Waardenberg; Ross L Tellam; Tony Vuocolo; Keren Byrne; Brian P Dalrymple Journal: BMC Res Notes Date: 2012-11-13