| Literature DB >> 20003473 |
Milena Sokolowska1, Karolina Wodz-Naskiewicz, Malgorzata Cieslak, Karolina Seta, Andrzej K Bednarek, Rafal Pawliczak.
Abstract
BACKGROUND: Cysteinyl leukotrienes are potent inflammatory mediators implicated in the pathogenesis of asthma. Human cysteinyl leukotriene receptor 1 (CYSLTR1) gene contains five exons that are variably spliced. Within its promoter few polymorphisms were described. To date, there has been no evidence about the expression of different splice variants of CysLT1 in asthma and their association with CYSLTR1 promoter polymorphisms.The goal of our study was to investigate CysLT1 alternative transcripts expression in asthmatic patients with different CYSLTR1 promoter haplotypes.The study groups consisted of 44 patients with asthma, diagnosed according to GINA 2008 criteria and 18 healthy subjects. Genomic DNA and total RNA was extracted from peripheral blood mononuclear cells. Real-time PCR was performed with specific primers for transcript I [GenBank:DQ131799] and II [GenBank:DQ131800]. Fragments of the CYSLTR1 promoter were amplified by PCR and sequenced directly to identify four single nucleotide polymorphisms: C/T [SNP:rs321029], A/C [SNP:rs2637204], A/G [SNP:rs2806489] and C/T [SNP:rs7066737].Entities:
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Year: 2009 PMID: 20003473 PMCID: PMC2805608 DOI: 10.1186/1471-2172-10-63
Source DB: PubMed Journal: BMC Immunol ISSN: 1471-2172 Impact factor: 3.615
Characteristics of the studied groups
| Asthma | Controls | |
|---|---|---|
| 44 | 18 | |
| 19/25 | 11/7 | |
| 53 (21-77) | 41(20-71) | |
| 62 (9-124) | n.a. | |
| 79 (37-113) | n.a. | |
| 365 (223-610) | n.a. | |
| 0.97 (0-3.31) | n.a. | |
| 0.49 (0-2.51) | n.a. | |
| 0 (0-0.83) | n.a. | |
| 0.36 (0-3.16) | n.a. | |
| 1258 (158-3289) | n.a. | |
| 1.6 (0-10.6) | n.a. | |
| 76.4 (0-365) | n.a. | |
| 2.3 (0-10) | n.a. | |
| 0 (0-26.1) | n.a. | |
| 20.5 | 16.6 | |
| 63 | 0.0 | |
| 2.6 | 0.0 | |
| 20.5 | 0.0 | |
| 10.2 | 0.0 | |
| 59 | 0.0 |
Variables are shown as median and range or percentage. n.a. - non applicable.
Haplotypes frequency in the asthmatic population (n = 44) and healthy subjects (n = 18)
| Alleles | C/T (rs321029) | A/C (rs2637204) | A/G (rs2806489) | C/T (rs70667337) | % |
|---|---|---|---|---|---|
| Haplotype | |||||
| ht1 | C | A | A | C | 75.4 |
| ht2 | T | C | G | C | 20.3 |
| ht3 | C | A | A | T | 1.4 |
| ht4 | C | A | G | C | 1.5 |
| ht5 | T | C | A | C | 1.4 |
| Haplotype | |||||
| ht1 | C | A | A | C | 84 |
| ht2 | T | C | G | C | 12 |
| ht3 | C | A | A | T | 4 |
| ht4 | C | A | G | C | 0 |
| ht5 | T | C | A | C | 0 |
Figure 1CysLT. Data are expressed as dots. Horizontal line represents mean. Asterisk indicates p < 0.05.
Figure 2CysLT. Data are expressed as dots. Horizontal line represents mean. Asterisk indicates p < 0.05.
Figure 3Correlation of CysLT. Spearman's rank correlation coefficient was R = - 0.52, pcor = 0.0009.
Figure 4CysLTR. Data are expressed as dots. Horizontal line represents mean. Asterisk indicates p < 0.05.