Literature DB >> 20000804

Evaluation and optimization of a force field for crystalline forms of mannitol and sorbitol.

H de Waard1, A Amani, J Kendrick, W L J Hinrichs, H W Frijlink, J Anwar.   

Abstract

Two force fields, the GROMOS53A5/53A6 (united atom) and the AMBER95 (all atom) parameter sets, coupled with partial atomic charges derived from quantum mechanical calculations were evaluated for their ability to reproduce the known crystalline forms of the polyols mannitol and sorbitol. The force fields were evaluated using molecular dynamics simulations at 10 K (which is akin to potential energy minimization) with the simulation cell lengths and angles free to evolve. Both force fields performed relatively poorly, not being able to simultaneously reproduce all of the crystal structures within a 5% deviation level. The parameter sets were then systematically optimized using sensitivity analysis, and a revised AMBER95 set was found to reproduce the crystal structures with less than 5% deviation from experiment. The stability of the various crystalline forms for each of the parameter sets (original and revised) was then assessed in extended MD simulations at 298 K and 1 bar covering 1 ns simulation time. The AMBER95 parameter sets (original and revised) were found to be effective in reproducing the crystal structures in these more stringent tests. Remarkably, the performance of the original AMBER95 parameter set was found to be slightly better than that of the revised set in these simulations at 298 K. The results of this study suggest that, whenever feasible, one should include molecular simulations at elevated temperatures when optimizing parameters.

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Year:  2010        PMID: 20000804     DOI: 10.1021/jp9052665

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  2 in total

1.  Polarizable empirical force field for acyclic polyalcohols based on the classical Drude oscillator.

Authors:  Xibing He; Pedro E M Lopes; Alexander D Mackerell
Journal:  Biopolymers       Date:  2013-10       Impact factor: 2.505

2.  Cleaving Method for Molecular Crystals and Its Application to Calculation of the Surface Free Energy of Crystalline β-d-Mannitol at Room Temperature.

Authors:  Nicodemo Di Pasquale; Ruslan L Davidchack
Journal:  J Phys Chem A       Date:  2022-03-24       Impact factor: 2.781

  2 in total

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