Literature DB >> 19997966

Fluorescence quenching to study protein-ligand binding: common errors.

Marco van de Weert1.   

Abstract

A number of recent articles, amongst others several published in the Journal of Fluorescence, use inappropriate fluorescence methodology to determine ligand binding characteristics to (mostly) proteins. In this Letter, several common pitfalls are discussed in relation to two recent publications in the Journal of Fluorescence (Wang et al. (2009) 19:801-808; Ding et al. (2009) 19:783-791). The Author hopes that this contribution helps to prevent a further spread of the incorrect methodology, and results in a reappraisal of those articles already published using similar methodology.

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Year:  2009        PMID: 19997966     DOI: 10.1007/s10895-009-0572-x

Source DB:  PubMed          Journal:  J Fluoresc        ISSN: 1053-0509            Impact factor:   2.217


  16 in total

1.  Studies on the interaction of tricyclazole with beta-cyclodextrin and human serum albumin by spectroscopy.

Authors:  Hua-Xin Zhang; Xing Huang; Ping Mei; Ke-Hua Li; Cheng-Nong Yan
Journal:  J Fluoresc       Date:  2006-05-16       Impact factor: 2.217

2.  Characterization of interaction between bergenin and human serum albumin in membrane mimetic environments.

Authors:  Yaheng Zhang; Lijun Dong; Ying Li; Jiazhong Li; Xingguo Chen
Journal:  J Fluoresc       Date:  2008-02-23       Impact factor: 2.217

3.  A study of the interaction between malachite green and lysozyme by steady-state fluorescence.

Authors:  Fei Ding; Wei Liu; Feng Liu; Zhi-Yuan Li; Ying Sun
Journal:  J Fluoresc       Date:  2009-03-31       Impact factor: 2.217

4.  Low-resolution structures of proteins in solution retrieved from X-ray scattering with a genetic algorithm.

Authors:  P Chacón; F Morán; J F Díaz; E Pantos; J M Andreu
Journal:  Biophys J       Date:  1998-06       Impact factor: 4.033

5.  Thermodynamic studies on the interaction of dioxopromethazine to beta-cyclodextrin and bovine serum albumin.

Authors:  Hua-Xin Zhang; Xing Huang; Min Zhang
Journal:  J Fluoresc       Date:  2008-02-23       Impact factor: 2.217

6.  Probing the interaction of trans-resveratrol with bovine serum albumin: a fluorescence quenching study with Tachiya model.

Authors:  J B Xiao; X Q Chen; X Y Jiang; M Hilczer; M Tachiya
Journal:  J Fluoresc       Date:  2008-03-20       Impact factor: 2.217

7.  Interaction of thyroxine with 7 hydroxycoumarin: a fluorescence quenching study.

Authors:  Elmas Gök; Canan Oztürk; Nuriye Akbay
Journal:  J Fluoresc       Date:  2008-06-04       Impact factor: 2.217

8.  Nitroaniline isomers interaction with bovine serum albumin and toxicological implications.

Authors:  Guanghong Xiang; Changlun Tong; Haizhuan Lin
Journal:  J Fluoresc       Date:  2007-07-11       Impact factor: 2.217

9.  Binding of puerarin to human serum albumin: a spectroscopic analysis and molecular docking.

Authors:  Yang He; Yiwei Wang; Lifei Tang; Hui Liu; Wei Chen; Zhongliang Zheng; Guolin Zou
Journal:  J Fluoresc       Date:  2007-12-06       Impact factor: 2.217

10.  Study on the interaction between florasulam and bovine serum albumin.

Authors:  Dehuan Ran; Xia Wu; Jinhua Zheng; Jinghe Yang; Haiping Zhou; Meifeng Zhang; Yongjun Tang
Journal:  J Fluoresc       Date:  2007-08-17       Impact factor: 2.525

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  18 in total

1.  A Note on the use of Steady-State Fluorescence Quenching to Quantify Nanoparticle-Protein Interactions.

Authors:  Alioscka A Sousa
Journal:  J Fluoresc       Date:  2015-09-26       Impact factor: 2.217

2.  Structural characterization of metal binding to a cold-adapted frataxin.

Authors:  Martín E Noguera; Ernesto A Roman; Juan B Rigal; Alexandra Cousido-Siah; André Mitschler; Alberto Podjarny; Javier Santos
Journal:  J Biol Inorg Chem       Date:  2015-04-02       Impact factor: 3.358

3.  Interaction of Cu(2+), Pb (2+), Zn (2+) with trypsin: what is the key factor of their toxicity?

Authors:  Tong Zhang; Hao Zhang; Guiliang Liu; Canzhu Gao; Rutao Liu
Journal:  J Fluoresc       Date:  2014-10-17       Impact factor: 2.217

4.  Analyses on the binding interaction between rice glutelin and conjugated linoleic acid by multi-spectroscopy and computational docking simulation.

Authors:  Yujia Xu; Taotao Dai; Kechou Huang; Lu Liang; Chengmei Liu; Jun Chen
Journal:  J Food Sci Technol       Date:  2019-10-10       Impact factor: 2.701

5.  His86 from the N-terminus of frataxin coordinates iron and is required for Fe-S cluster synthesis.

Authors:  Leslie E Gentry; Matthew A Thacker; Reece Doughty; Russell Timkovich; Laura S Busenlehner
Journal:  Biochemistry       Date:  2013-08-19       Impact factor: 3.162

6.  RXR agonist modulates TR: corepressor dissociation upon 9-cis retinoic acid treatment.

Authors:  Juliana Fattori; Jéssica L O Campos; Tábata R Doratioto; Lucas M Assis; Mariela T Vitorino; Igor Polikarpov; José Xavier-Neto; Ana Carolina M Figueira
Journal:  Mol Endocrinol       Date:  2014-12-26

7.  Paralogous Regulators ArsR1 and ArsR2 of Pseudomonas putida KT2440 as a Basis for Arsenic Biosensor Development.

Authors:  Matilde Fernández; Bertrand Morel; Juan L Ramos; Tino Krell
Journal:  Appl Environ Microbiol       Date:  2016-06-30       Impact factor: 4.792

8.  Kinetics and thermodynamics of glycans and glycoproteins binding to Holothuria scabra lectin: a fluorescence and surface plasmon resonance spectroscopic study.

Authors:  Nagaraj M Gowda; Sushama M Gaikwad; M Islam Khan
Journal:  J Fluoresc       Date:  2013-06-05       Impact factor: 2.217

9.  A study for the cause of ferulic acid-induced quenching of tyrosine fluorescence and whether it is a reliable marker of intermolecular interactions or not.

Authors:  Antonella Sgarbossa; Francesco Lenci
Journal:  J Fluoresc       Date:  2013-03-06       Impact factor: 2.217

10.  Fluorescence strategies for high-throughput quantification of protein interactions.

Authors:  Aaron R Hieb; Sheena D'Arcy; Michael A Kramer; Alison E White; Karolin Luger
Journal:  Nucleic Acids Res       Date:  2011-11-24       Impact factor: 16.971

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