Literature DB >> 19968340

Absolute free energies and equilibrium ensembles of dense fluids computed from a nondynamic growth method.

Divesh Bhatt1, Daniel M Zuckerman.   

Abstract

We demonstrate a nondynamical Monte Carlo method to compute free energies and generate equilibrium ensembles of dense fluids. In this method, based on step-by-step polymer growth algorithms, an ensemble of n+1 particles is obtained from an ensemble of n particles by generating configurations of the n+1st particle. A statistically rigorous resampling scheme is utilized to remove configurations with low weights and to avoid a combinatorial explosion; the free energy is obtained from the sum of the weights. In addition to the free energy, the method generates an equilibrium ensemble of the full system. We consider two different system sizes for a Lennard-Jones fluid and compare the results with conventional Monte Carlo methods.

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Year:  2009        PMID: 19968340      PMCID: PMC2802520          DOI: 10.1063/1.3269674

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  8 in total

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6.  A simulation method for calculating the absolute entropy and free energy of fluids: application to liquid argon and water.

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  8 in total
  2 in total

1.  Efficient equilibrium sampling of all-atom peptides using library-based Monte Carlo.

Authors:  Ying Ding; Artem B Mamonov; Daniel M Zuckerman
Journal:  J Phys Chem B       Date:  2010-05-06       Impact factor: 2.991

2.  Rapid sampling of all-atom peptides using a library-based polymer-growth approach.

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Journal:  J Comput Chem       Date:  2010-08-23       Impact factor: 3.376

  2 in total

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