Literature DB >> 19964806

Development of an automatic quantification method for cancer tissue microarray study.

Teresa H Sanders1, Todd H Stokes, Richard A Moffitt, Qaiser Chaudry, R Parry, May D Wang.   

Abstract

Clinical Histopathology is based on the analysis of immunohistochemistry (IHC) stained tissue images. Selection of antibodies for detecting the presence, type, and grade of cancerous tissue has a great influence on the diagnostic potential of IHC tests. Automated evaluation methods for tissue microarrays applied to many combinations of antibody and tissue type can speed development of new clinical assays. We present an automatic method that successfully quantifies stain intensity, fraction of cells stained and sub-cellular location of staining in tissue microarray images. The method combines an opponent color preprocessor and a novel statistical approach for identifying brown and blue staining, followed by multilevel morphological processing. We verify the capability of our method by comparing the results to manually annotated image databases. We also demonstrate cross-tissue robustness using two clinical case study data.

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Year:  2009        PMID: 19964806      PMCID: PMC4983438          DOI: 10.1109/IEMBS.2009.5334528

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  6 in total

1.  A high-throughput strategy for protein profiling in cell microarrays using automated image analysis.

Authors:  Sara Strömberg; Marcus Gry Björklund; Caroline Asplund; Anna Sköllermo; Anja Persson; Kenneth Wester; Caroline Kampf; Peter Nilsson; Ann-Catrin Andersson; Mathias Uhlen; Juha Kononen; Fredrik Ponten; Anna Asplund
Journal:  Proteomics       Date:  2007-06       Impact factor: 3.984

2.  Advances in residual vector quantization: a review.

Authors:  C F Barnes; S A Rizvi; N M Nasrabadi
Journal:  IEEE Trans Image Process       Date:  1996       Impact factor: 10.856

3.  Automated subcellular localization and quantification of protein expression in tissue microarrays.

Authors:  Robert L Camp; Gina G Chung; David L Rimm
Journal:  Nat Med       Date:  2002-10-21       Impact factor: 53.440

4.  A human protein atlas for normal and cancer tissues based on antibody proteomics.

Authors:  Mathias Uhlén; Erik Björling; Charlotta Agaton; Cristina Al-Khalili Szigyarto; Bahram Amini; Elisabet Andersen; Ann-Catrin Andersson; Pia Angelidou; Anna Asplund; Caroline Asplund; Lisa Berglund; Kristina Bergström; Harry Brumer; Dijana Cerjan; Marica Ekström; Adila Elobeid; Cecilia Eriksson; Linn Fagerberg; Ronny Falk; Jenny Fall; Mattias Forsberg; Marcus Gry Björklund; Kristoffer Gumbel; Asif Halimi; Inga Hallin; Carl Hamsten; Marianne Hansson; My Hedhammar; Görel Hercules; Caroline Kampf; Karin Larsson; Mats Lindskog; Wald Lodewyckx; Jan Lund; Joakim Lundeberg; Kristina Magnusson; Erik Malm; Peter Nilsson; Jenny Odling; Per Oksvold; Ingmarie Olsson; Emma Oster; Jenny Ottosson; Linda Paavilainen; Anja Persson; Rebecca Rimini; Johan Rockberg; Marcus Runeson; Asa Sivertsson; Anna Sköllermo; Johanna Steen; Maria Stenvall; Fredrik Sterky; Sara Strömberg; Mårten Sundberg; Hanna Tegel; Samuel Tourle; Eva Wahlund; Annelie Waldén; Jinghong Wan; Henrik Wernérus; Joakim Westberg; Kenneth Wester; Ulla Wrethagen; Lan Lan Xu; Sophia Hober; Fredrik Pontén
Journal:  Mol Cell Proteomics       Date:  2005-08-27       Impact factor: 5.911

5.  A framework for the automated analysis of subcellular patterns in human protein atlas images.

Authors:  Justin Newberg; Robert F Murphy
Journal:  J Proteome Res       Date:  2008-04-25       Impact factor: 4.466

Review 6.  Application of immunohistochemistry to the genitourinary system (prostate, urinary bladder, testis, and kidney).

Authors:  Kai Hans Hammerich; Gustavo E Ayala; Gustavo A Ayala; Thomas M Wheeler
Journal:  Arch Pathol Lab Med       Date:  2008-03       Impact factor: 5.534

  6 in total
  3 in total

1.  Utility of multispectral imaging in automated quantitative scoring of immunohistochemistry.

Authors:  Christopher Fiore; Dyane Bailey; Niamh Conlon; Xiaoqiu Wu; Neil Martin; Michelangelo Fiorentino; Stephen Finn; Katja Fall; Swen-Olof Andersson; Ove Andren; Massimo Loda; Richard Flavin
Journal:  J Clin Pathol       Date:  2012-03-23       Impact factor: 3.411

2.  ImageMiner: a software system for comparative analysis of tissue microarrays using content-based image retrieval, high-performance computing, and grid technology.

Authors:  David J Foran; Lin Yang; Wenjin Chen; Jun Hu; Lauri A Goodell; Michael Reiss; Fusheng Wang; Tahsin Kurc; Tony Pan; Ashish Sharma; Joel H Saltz
Journal:  J Am Med Inform Assoc       Date:  2011-05-23       Impact factor: 4.497

3.  Immunohistochemical analysis of breast tissue microarray images using contextual classifiers.

Authors:  Stephen J McKenna; Telmo Amaral; Shazia Akbar; Lee Jordan; Alastair Thompson
Journal:  J Pathol Inform       Date:  2013-03-30
  3 in total

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