Literature DB >> 19964266

Metadata and annotations for multi-scale electrophysiological data.

Mark R Bower1, Matt Stead, Benjamin H Brinkmann, Kevin Dufendach, Gregory A Worrell.   

Abstract

The increasing use of high-frequency (kHz), long-duration (days) intracranial monitoring from multiple electrodes during pre-surgical evaluation for epilepsy produces large amounts of data that are challenging to store and maintain. Descriptive metadata and clinical annotations of these large data sets also pose challenges to simple, often manual, methods of data analysis. The problems of reliable communication of metadata and annotations between programs, the maintenance of the meanings within that information over long time periods, and the flexibility to re-sort data for analysis place differing demands on data structures and algorithms. Solutions to these individual problem domains (communication, storage and analysis) can be configured to provide easy translation and clarity across the domains. The Multi-scale Annotation Format (MAF) provides an integrated metadata and annotation environment that maximizes code reuse, minimizes error probability and encourages future changes by reducing the tendency to over-fit information technology solutions to current problems. An example of a graphical utility for generating and evaluating metadata and annotations for "big data" files is presented.

Entities:  

Mesh:

Year:  2009        PMID: 19964266      PMCID: PMC2841502          DOI: 10.1109/IEMBS.2009.5333570

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  3 in total

1.  GenBank.

Authors:  D A Benson; M S Boguski; D J Lipman; J Ostell; B F Ouellette; B A Rapp; D L Wheeler
Journal:  Nucleic Acids Res       Date:  1999-01-01       Impact factor: 16.971

2.  Big data: The future of biocuration.

Authors:  Doug Howe; Maria Costanzo; Petra Fey; Takashi Gojobori; Linda Hannick; Winston Hide; David P Hill; Renate Kania; Mary Schaeffer; Susan St Pierre; Simon Twigger; Owen White; Seung Yon Rhee
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

3.  Large-scale electrophysiology: acquisition, compression, encryption, and storage of big data.

Authors:  Benjamin H Brinkmann; Mark R Bower; Keith A Stengel; Gregory A Worrell; Matt Stead
Journal:  J Neurosci Methods       Date:  2009-04-01       Impact factor: 2.390

  3 in total
  3 in total

1.  A formal mathematical framework for physiological observations, experiments and analyses.

Authors:  Thomas A Nielsen; Henrik Nilsson; Tom Matheson
Journal:  J R Soc Interface       Date:  2011-10-05       Impact factor: 4.118

2.  Spatiotemporal neuronal correlates of seizure generation in focal epilepsy.

Authors:  Mark R Bower; Matt Stead; Fredric B Meyer; W Richard Marsh; Gregory A Worrell
Journal:  Epilepsia       Date:  2012-02-21       Impact factor: 5.864

Review 3.  Toward a Literature-Driven Definition of Big Data in Healthcare.

Authors:  Emilie Baro; Samuel Degoul; Régis Beuscart; Emmanuel Chazard
Journal:  Biomed Res Int       Date:  2015-06-02       Impact factor: 3.411

  3 in total

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