Literature DB >> 19961191

A reliable and efficient first principles-based method for predicting pK(a) values. 1. Methodology.

Shuming Zhang1, Jon Baker, Peter Pulay.   

Abstract

We have developed an efficient and reliable protocol for the calculation of pK(a) values in aqueous solution from density functional calculations. We establish a standard linear regression fit using only calculated energies of deprotonation and experimental pK(a) values; all other factors, including most entropic effects, are absorbed into the fitting constants. In this article we fit a small training set of 34 experimentally well-characterized molecules to determine the best level of theory among those tested (i.e., the optimum compromise between efficiency and accuracy for the basis set, the exchange-correlation functional, the (continuum) solvation model and the level of geometry optimization). Our main findings are that a relatively modest basis set (6-311+G**) suffices for the calculation of the energy differences, with an even small basis set (3-21G*) sufficient for the preceding geometry optimization. Using a solvation model (COSMO in our case) throughout is essential to achieve reliable results. The exchange-correlation functional plays only a modest role; in particular, pure DFT functionals that allow the efficient calculation of the Coulomb term are perfectly adequate. The final protocol will be applied subsequently to data sets much larger than commonly used in such studies.

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Year:  2010        PMID: 19961191     DOI: 10.1021/jp9067069

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  7 in total

1.  Correlations between the 1H NMR chemical shieldings and the pKa values of organic acids and amines.

Authors:  Juanfeng Lu; Tingting Lu; Xinyun Zhao; Xi Chen; Chang-Guo Zhan
Journal:  J Mol Model       Date:  2018-06-01       Impact factor: 1.810

2.  Blind prediction of distribution in the SAMPL5 challenge with QM based protomer and pK a corrections.

Authors:  Frank C Pickard; Gerhard König; Florentina Tofoleanu; Juyong Lee; Andrew C Simmonett; Yihan Shao; Jay W Ponder; Bernard R Brooks
Journal:  J Comput Aided Mol Des       Date:  2016-09-19       Impact factor: 3.686

3.  Oxyanion steering and CH-π interactions as key elements in an N-heterocyclic carbene-catalyzed [4 + 2] cycloaddition.

Authors:  Scott E Allen; Jessada Mahatthananchai; Jeffrey W Bode; Marisa C Kozlowski
Journal:  J Am Chem Soc       Date:  2012-07-16       Impact factor: 15.419

4.  Microhydration and the Enhanced Acidity of Free Radicals.

Authors:  John C Walton
Journal:  Molecules       Date:  2018-02-14       Impact factor: 4.411

5.  Experiment stands corrected: accurate prediction of the aqueous pK a values of sulfonamide drugs using equilibrium bond lengths.

Authors:  Beth A Caine; Maddalena Bronzato; Paul L A Popelier
Journal:  Chem Sci       Date:  2019-05-29       Impact factor: 9.825

6.  Direct detection of coupled proton and electron transfers in human manganese superoxide dismutase.

Authors:  Jahaun Azadmanesh; William E Lutz; Leighton Coates; Kevin L Weiss; Gloria E O Borgstahl
Journal:  Nat Commun       Date:  2021-04-06       Impact factor: 14.919

7.  Sulfur and Phosphorus Oxyacid Radicals.

Authors:  Michael Bühl; Tallulah Hutson; Alice Missio; John C Walton
Journal:  J Phys Chem A       Date:  2022-01-27       Impact factor: 2.781

  7 in total

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