Literature DB >> 19961175

Bidirectional correlation of NMR and capillary electrophoresis fingerprints: a new approach to investigating Schistosoma mansoni infection in a mouse model.

I Garcia-Perez1, A Couto Alves, S Angulo, J V Li, J Utzinger, T M D Ebbels, C Legido-Quigley, J K Nicholson, E Holmes, C Barbas.   

Abstract

We demonstrate the statistical integration of nuclear magnetic resonance (NMR) spectroscopy and capillary electrophoresis (CE) data in order to describe a pathological state caused by Schistosoma mansoni infection in a mouse model based on urinary metabolite profiles. Urine samples from mice 53 days post infection with S. mansoni and matched controls were analyzed via NMR spectroscopy and CE. The two sets of metabolic profiles were first processed and analyzed independently and were subsequently integrated using statistical correlation methods in order to facilitate cross assignment of metabolites. Using this approach, metabolites such as 3-ureidopropionate, p-cresol glucuronide, phenylacetylglycine, indoxyl sulfate, isocitrate, and trimethylamine were identified as differentiating between infected and control animals. These correlation analyses facilitated structural elucidation using the identification power of one technique to enhance and validate the other, but also highlighted the enhanced ability to detect functional correlations between metabolites, thereby providing potential for achieving deeper mechanistic insight into the biological process.

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Year:  2010        PMID: 19961175     DOI: 10.1021/ac901728w

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  10 in total

1.  Urinary metabolic phenotyping the slc26a6 (chloride-oxalate exchanger) null mouse model.

Authors:  Isabel Garcia-Perez; Alma Villaseñor; Anisha Wijeyesekera; Joram M Posma; Zhirong Jiang; Jeremiah Stamler; Peter Aronson; Robert Unwin; Coral Barbas; Paul Elliott; Jeremy Nicholson; Elaine Holmes
Journal:  J Proteome Res       Date:  2012-08-28       Impact factor: 4.466

2.  Identifying unknown metabolites using NMR-based metabolic profiling techniques.

Authors:  Isabel Garcia-Perez; Joram M Posma; Jose Ivan Serrano-Contreras; Claire L Boulangé; Queenie Chan; Gary Frost; Jeremiah Stamler; Paul Elliott; John C Lindon; Elaine Holmes; Jeremy K Nicholson
Journal:  Nat Protoc       Date:  2020-07-17       Impact factor: 13.491

3.  Influence of soil characteristics on the diversity of bacteria in the Southern Brazilian Atlantic Forest.

Authors:  H Faoro; A C Alves; E M Souza; L U Rigo; L M Cruz; S M Al-Janabi; R A Monteiro; V A Baura; F O Pedrosa
Journal:  Appl Environ Microbiol       Date:  2010-05-21       Impact factor: 4.792

Review 4.  Recent developments in instrumentation for capillary electrophoresis and microchip-capillary electrophoresis.

Authors:  Jessica L Felhofer; Lucas Blanes; Carlos D Garcia
Journal:  Electrophoresis       Date:  2010-08       Impact factor: 3.535

Review 5.  Advances in the Diagnosis of Human Schistosomiasis.

Authors:  Kosala G A D Weerakoon; Geoffrey N Gobert; Pengfei Cai; Donald P McManus
Journal:  Clin Microbiol Rev       Date:  2015-10       Impact factor: 26.132

6.  Metabolic changes reveal the development of schistosomiasis in mice.

Authors:  Junfang Wu; Wenxin Xu; Zhenping Ming; Huifen Dong; Huiru Tang; Yulan Wang
Journal:  PLoS Negl Trop Dis       Date:  2010-08-31

7.  Interpretation and visualization of non-linear data fusion in kernel space: study on metabolomic characterization of progression of multiple sclerosis.

Authors:  Agnieszka Smolinska; Lionel Blanchet; Leon Coulier; Kirsten A M Ampt; Theo Luider; Rogier Q Hintzen; Sybren S Wijmenga; Lutgarde M C Buydens
Journal:  PLoS One       Date:  2012-06-08       Impact factor: 3.240

Review 8.  Development of "-omics" research in Schistosoma spp. and -omics-based new diagnostic tools for schistosomiasis.

Authors:  Shuqi Wang; Wei Hu
Journal:  Front Microbiol       Date:  2014-06-26       Impact factor: 5.640

9.  Systematic Isolation and Structure Elucidation of Urinary Metabolites Optimized for the Analytical-Scale Molecular Profiling Laboratory.

Authors:  Luke Whiley; Elena Chekmeneva; David J Berry; Beatriz Jiménez; Ada H Y Yuen; Ash Salam; Humma Hussain; Matthias Witt; Zoltan Takats; Jeremy Nicholson; Matthew R Lewis
Journal:  Anal Chem       Date:  2019-07-01       Impact factor: 6.986

10.  In vitro metabolomic footprint of the Echinococcus multilocularis metacestode.

Authors:  Dominic Ritler; Reto Rufener; Jia V Li; Urs Kämpfer; Joachim Müller; Claudia Bühr; Stefan Schürch; Britta Lundström-Stadelmann
Journal:  Sci Rep       Date:  2019-12-19       Impact factor: 4.379

  10 in total

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