Literature DB >> 19956359

The Stanford Automated Mounter: Enabling High-Throughput Protein Crystal Screening at SSRL.

Clyde A Smith1, Aina E Cohen.   

Abstract

The macromolecular crystallography experiment lends itself perfectly to high-throughput technologies. The initial steps including the expression, purification and crystallization of protein crystals, along with some of the later steps involving data processing and structure determination have all been automated to the point where some of the last remaining bottlenecks in the process have been crystal mounting, crystal screening and data collection. At the Stanford Synchrotron Radiation Laboratory (SSRL), a National User Facility which provides extremely brilliant X-ray photon beams for use in materials science, environmental science and structural biology research, the incorporation of advanced robotics has enabled crystals to be screened in a true high-throughput fashion, thus dramatically accelerating the final steps. Up to 288 frozen crystals can be mounted by the beamline robot (the Stanford Automated Mounter, or SAM) and screened for diffraction quality in a matter of hours without intervention. The best quality crystals can then be remounted for the collection of complete X-ray diffraction data sets. Furthermore, the entire screening and data collection experiment can be controlled from the experimenter's home laboratory by means of advanced software tools that enable network-based control of the highly automated beamlines.

Entities:  

Year:  2008        PMID: 19956359      PMCID: PMC2654326          DOI: 10.1016/j.jala.2008.08.008

Source DB:  PubMed          Journal:  JALA Charlottesv Va        ISSN: 1535-5535


  5 in total

1.  Blu-Ice and the Distributed Control System: software for data acquisition and instrument control at macromolecular crystallography beamlines.

Authors:  Timothy M McPhillips; Scott E McPhillips; Hsiu-Ju Chiu; Aina E Cohen; Ashley M Deacon; Paul J Ellis; Elspeth Garman; Ana Gonzalez; Nicholas K Sauter; R Paul Phizackerley; S Michael Soltis; Peter Kuhn
Journal:  J Synchrotron Radiat       Date:  2002-11-01       Impact factor: 2.616

Review 2.  Macromolecular cryocrystallography--methods for cooling and mounting protein crystals at cryogenic temperatures.

Authors:  J W Pflugrath
Journal:  Methods       Date:  2004-11       Impact factor: 3.608

3.  An automated system to mount cryo-cooled protein crystals on a synchrotron beam line, using compact sample cassettes and a small-scale robot.

Authors:  Aina E Cohen; Paul J Ellis; Mitchell D Miller; Ashley M Deacon; R Paul Phizackerley
Journal:  J Appl Crystallogr       Date:  2002-12       Impact factor: 3.304

4.  Structural genomics of the Thermotoga maritima proteome implemented in a high-throughput structure determination pipeline.

Authors:  Scott A Lesley; Peter Kuhn; Adam Godzik; Ashley M Deacon; Irimpan Mathews; Andreas Kreusch; Glen Spraggon; Heath E Klock; Daniel McMullan; Tanya Shin; Juli Vincent; Alyssa Robb; Linda S Brinen; Mitchell D Miller; Timothy M McPhillips; Mark A Miller; Daniel Scheibe; Jaume M Canaves; Chittibabu Guda; Lukasz Jaroszewski; Thomas L Selby; Marc-Andre Elsliger; John Wooley; Susan S Taylor; Keith O Hodgson; Ian A Wilson; Peter G Schultz; Raymond C Stevens
Journal:  Proc Natl Acad Sci U S A       Date:  2002-08-22       Impact factor: 11.205

5.  New paradigm for macromolecular crystallography experiments at SSRL: automated crystal screening and remote data collection.

Authors:  S Michael Soltis; Aina E Cohen; Ashley Deacon; Thomas Eriksson; Ana González; Scott McPhillips; Hsui Chui; Pete Dunten; Michael Hollenbeck; Irimpan Mathews; Mitch Miller; Penjit Moorhead; R Paul Phizackerley; Clyde Smith; Jinhu Song; Henry van dem Bedem; Paul Ellis; Peter Kuhn; Timothy McPhillips; Nicholas Sauter; Kenneth Sharp; Irina Tsyba; Guenter Wolf
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2008-11-18
  5 in total
  8 in total

1.  Non-Contact Universal Sample Presentation for Room Temperature Macromolecular Crystallography Using Acoustic Levitation.

Authors:  R H Morris; E R Dye; D Axford; M I Newton; J H Beale; P T Docker
Journal:  Sci Rep       Date:  2019-08-27       Impact factor: 4.379

2.  Role of the Conserved Disulfide Bridge in Class A Carbapenemases.

Authors:  Clyde A Smith; Zahra Nossoni; Marta Toth; Nichole K Stewart; Hilary Frase; Sergei B Vakulenko
Journal:  J Biol Chem       Date:  2016-09-02       Impact factor: 5.157

3.  Remote access to crystallography beamlines at SSRL: novel tools for training, education and collaboration.

Authors:  Clyde A Smith; Graeme L Card; Aina E Cohen; Tzanko I Doukov; Thomas Eriksson; Ana M Gonzalez; Scott E McPhillips; Pete W Dunten; Irimpan I Mathews; Jinhu Song; S Michael Soltis
Journal:  J Appl Crystallogr       Date:  2010-08-03       Impact factor: 3.304

4.  The Stanford Automated Mounter: pushing the limits of sample exchange at the SSRL macromolecular crystallography beamlines.

Authors:  Silvia Russi; Jinhu Song; Scott E McPhillips; Aina E Cohen
Journal:  J Appl Crystallogr       Date:  2016-02-24       Impact factor: 3.304

5.  High-density grids for efficient data collection from multiple crystals.

Authors:  Elizabeth L Baxter; Laura Aguila; Roberto Alonso-Mori; Christopher O Barnes; Christopher A Bonagura; Winnie Brehmer; Axel T Brunger; Guillermo Calero; Tom T Caradoc-Davies; Ruchira Chatterjee; William F Degrado; James S Fraser; Mohamed Ibrahim; Jan Kern; Brian K Kobilka; Andrew C Kruse; Karl M Larsson; Heinrik T Lemke; Artem Y Lyubimov; Aashish Manglik; Scott E McPhillips; Erik Norgren; Siew S Pang; S M Soltis; Jinhu Song; Jessica Thomaston; Yingssu Tsai; William I Weis; Rahel A Woldeyes; Vittal Yachandra; Junko Yano; Athina Zouni; Aina E Cohen
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-01-01       Impact factor: 7.652

6.  The crystal structure of dGTPase reveals the molecular basis of dGTP selectivity.

Authors:  Christopher O Barnes; Ying Wu; Jinhu Song; Guowu Lin; Elizabeth L Baxter; Aaron S Brewster; V Nagarajan; Andrew Holmes; S Michael Soltis; Nicholas K Sauter; Jinwoo Ahn; Aina E Cohen; Guillermo Calero
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-24       Impact factor: 11.205

Review 7.  Fragment-based screening by protein crystallography: successes and pitfalls.

Authors:  Zorik Chilingaryan; Zhou Yin; Aaron J Oakley
Journal:  Int J Mol Sci       Date:  2012-10-08       Impact factor: 5.923

8.  FlexED8: the first member of a fast and flexible sample-changer family for macromolecular crystallography.

Authors:  Gergely Papp; Franck Felisaz; Clement Sorez; Marcos Lopez-Marrero; Robert Janocha; Babu Manjasetty; Alexandre Gobbo; Hassan Belrhali; Matthew W Bowler; Florent Cipriani
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-09-29       Impact factor: 7.652

  8 in total

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