Literature DB >> 19955121

Next-generation tools for evolutionary invasion analyses.

Amy Hurford1, Daniel Cownden, Troy Day.   

Abstract

Evolutionary invasion analysis is a powerful technique for modelling in evolutionary biology. The general approach is to derive an expression for the growth rate of a mutant allele encoding some novel phenotype, and then to use this expression to predict long-term evolutionary outcomes. Mathematically, such 'invasion fitness' expressions are most often derived using standard linear stability analyses from dynamical systems theory. Interestingly, there is a mathematically equivalent approach to such stability analyses that is often employed in mathematical epidemiology, and that is based on so-called 'next-generation' matrices. Although this next-generation matrix approach has sometimes also been used in evolutionary invasion analyses, it is not yet common in this area despite the fact that it can sometimes greatly simplify calculations. The aim of this article is to bring the approach to a wider evolutionary audience in two ways. First, we review the next-generation matrix approach and provide a novel, and easily intuited, interpretation of how this approach relates to more standard techniques. Second, we illustrate next-generation methods in evolutionary invasion analysis through a series of informative examples. Although focusing primarily on evolutionary invasion analysis, we provide several insights that apply to biological modelling in general.

Mesh:

Year:  2009        PMID: 19955121      PMCID: PMC2842787          DOI: 10.1098/rsif.2009.0448

Source DB:  PubMed          Journal:  J R Soc Interface        ISSN: 1742-5662            Impact factor:   4.118


  14 in total

1.  Reproduction numbers and sub-threshold endemic equilibria for compartmental models of disease transmission.

Authors:  P van den Driessche; James Watmough
Journal:  Math Biosci       Date:  2002 Nov-Dec       Impact factor: 2.144

2.  On the definition and the computation of the basic reproduction ratio R0 in models for infectious diseases in heterogeneous populations.

Authors:  O Diekmann; J A Heesterbeek; J A Metz
Journal:  J Math Biol       Date:  1990       Impact factor: 2.259

3.  A graph-theoretic method for the basic reproduction number in continuous time epidemiological models.

Authors:  Tomás de-Camino-Beck; Mark A Lewis; P van den Driessche
Journal:  J Math Biol       Date:  2008-12-02       Impact factor: 2.259

4.  Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future.

Authors:  S Alizon; A Hurford; N Mideo; M Van Baalen
Journal:  J Evol Biol       Date:  2009-02       Impact factor: 2.411

5.  On net reproductive rate and the timing of reproductive output.

Authors:  T de-Camino-Beck; M A Lewis
Journal:  Am Nat       Date:  2008-07       Impact factor: 3.926

6.  How should we define 'fitness' for general ecological scenarios?

Authors:  J A Metz; R M Nisbet; S A Geritz
Journal:  Trends Ecol Evol       Date:  1992-06       Impact factor: 17.712

7.  The dynamical theory of coevolution: a derivation from stochastic ecological processes.

Authors:  U Dieckmann; R Law
Journal:  J Math Biol       Date:  1996       Impact factor: 2.259

Review 8.  Models of parasite virulence.

Authors:  S A Frank
Journal:  Q Rev Biol       Date:  1996-03       Impact factor: 4.875

9.  Coevolution of hosts and parasites.

Authors:  R M Anderson; R M May
Journal:  Parasitology       Date:  1982-10       Impact factor: 3.234

10.  Extraordinary sex ratios. A sex-ratio theory for sex linkage and inbreeding has new implications in cytogenetics and entomology.

Authors:  W D Hamilton
Journal:  Science       Date:  1967-04-28       Impact factor: 47.728

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  34 in total

1.  Inhibition of superinfection and the evolution of viral latency.

Authors:  Thomas W Berngruber; Franz J Weissing; Sylvain Gandon
Journal:  J Virol       Date:  2010-07-21       Impact factor: 5.103

2.  From within-host interactions to epidemiological competition: a general model for multiple infections.

Authors:  Mircea T Sofonea; Samuel Alizon; Yannis Michalakis
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-08-19       Impact factor: 6.237

3.  Evolution of hosts paying manifold costs of defence.

Authors:  Clayton E Cressler; Andrea L Graham; Troy Day
Journal:  Proc Biol Sci       Date:  2015-04-07       Impact factor: 5.349

4.  Necessary and sufficient conditions for R₀ to be a sum of contributions of fertility loops.

Authors:  Claus Rueffler; Johan A J Metz
Journal:  J Math Biol       Date:  2012-09-18       Impact factor: 2.259

5.  The evolutionary dynamics of within-generation immune priming in invertebrate hosts.

Authors:  Alex Best; Hannah Tidbury; Andy White; Mike Boots
Journal:  J R Soc Interface       Date:  2012-12-26       Impact factor: 4.118

6.  Parasite-Mediated Anorexia and Nutrition Modulate Virulence Evolution.

Authors:  Jessica L Hite; Clayton E Cressler
Journal:  Integr Comp Biol       Date:  2019-11-01       Impact factor: 3.326

7.  Evaluation of targeted influenza vaccination strategies via population modeling.

Authors:  John Glasser; Denis Taneri; Zhilan Feng; Jen-Hsiang Chuang; Peet Tüll; William Thompson; Mary Mason McCauley; James Alexander
Journal:  PLoS One       Date:  2010-09-17       Impact factor: 3.240

Review 8.  Co-infection and super-infection models in evolutionary epidemiology.

Authors:  Samuel Alizon
Journal:  Interface Focus       Date:  2013-12-06       Impact factor: 3.906

9.  The evolutionary dynamics of viruses: virion release strategies, time delays and fitness minima.

Authors:  Jennifer S Lord; Michael B Bonsall
Journal:  Virus Evol       Date:  2021-04-27

10.  Host resistance, population structure and the long-term persistence of bubonic plague: contributions of a modelling approach in the Malagasy focus.

Authors:  Fanny Gascuel; Marc Choisy; Jean-Marc Duplantier; Florence Débarre; Carine Brouat
Journal:  PLoS Comput Biol       Date:  2013-05-09       Impact factor: 4.475

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