Literature DB >> 19944174

Phylogeny and biogeography of the eastern Asian-North American disjunct wild-rice genus (Zizania L., Poaceae).

Xinwei Xu1, Christina Walters, Michael F Antolin, Mara L Alexander, Sue Lutz, Song Ge, Jun Wen.   

Abstract

The wild-rice genus Zizania includes four species disjunctly distributed in eastern Asia and North America, with three species (Z. aquatica, Z. palustris, and Z. texana) in North America and one (Z. latifolia) in eastern Asia. The phylogeny of Zizania was constructed using sequences of seven DNA fragments (atpB-rbcL, matK, rps16, trnL-F, trnH-psbA, nad1, and Adh1a) from chloroplast, mitochondrial, and nuclear genomes. Zizania is shown to be monophyletic with the North American species forming a clade and the eastern Asian Z. latifolia sister to the North American clade. The divergence between the eastern Asian Z. latifolia and the North American clade was dated to be 3.74 (95% HPD: 1.04-7.23) million years ago (mya) using the Bayesian dating method with the combined atpB-rbcL, matK, rps16, trnL-F, and nad1 data. Biogeographic analyses using a likelihood method suggest the North American origin of Zizania and its migration into eastern Asia via the Bering land bridge. Among the three North American species, the organellar data and the haplotype network of the nuclear Adh1a gene show a close relationship between Z. palustris and the narrowly distributed endangered species Z. texana. Bayesian dating estimated the divergence of North American Zizania to be 0.71 (95% HPD: 0.12-1.54) mya in the Pleistocene. The non-monophyly of Z. palustris and Z. aquatica in the organellar and nuclear data is most likely caused by incomplete lineage sorting, yet low-frequency unidirectional introgression of Z. palustris into Z. aquatica is present in the nuclear data as well. Published by Elsevier Inc.

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Year:  2009        PMID: 19944174     DOI: 10.1016/j.ympev.2009.11.018

Source DB:  PubMed          Journal:  Mol Phylogenet Evol        ISSN: 1055-7903            Impact factor:   4.286


  10 in total

1.  Molecular phylogenetics and historical biogeography of the tribe Lilieae (Liliaceae): bi-directional dispersal between biodiversity hotspots in Eurasia.

Authors:  Jiao Huang; Li-Qin Yang; Yan Yu; Yan-Mei Liu; Deng-Feng Xie; Juan Li; Xing-Jin He; Song-Dong Zhou
Journal:  Ann Bot       Date:  2018-12-31       Impact factor: 4.357

2.  Shoot rot of Zizania latifolia and the first record of its pathogen Pantoea ananatis in China.

Authors:  Zilan Xiao; Jianping Deng; Xiaojun Zhou; Liyan Zhu; Xiaochan He; Jingwu Zheng; Deping Guo; Jingze Zhang
Journal:  J Zhejiang Univ Sci B       Date:  2022-04-15       Impact factor: 3.066

3.  Bonobos fall within the genomic variation of chimpanzees.

Authors:  Anne Fischer; Kay Prüfer; Jeffrey M Good; Michel Halbwax; Victor Wiebe; Claudine André; Rebeca Atencia; Lawrence Mugisha; Susan E Ptak; Svante Pääbo
Journal:  PLoS One       Date:  2011-06-29       Impact factor: 3.240

4.  The phylogeographic structure of Hydrilla verticillata (Hydrocharitaceae) in China and its implications for the biogeographic history of this worldwide-distributed submerged macrophyte.

Authors:  Jinning Zhu; Dan Yu; Xinwei Xu
Journal:  BMC Evol Biol       Date:  2015-05-24       Impact factor: 3.260

5.  Does the Arcto-Tertiary biogeographic hypothesis explain the disjunct distribution of Northern Hemisphere herbaceous plants? The case of Meehania (Lamiaceae).

Authors:  Tao Deng; Ze-Long Nie; Bryan T Drew; Sergei Volis; Changkyun Kim; Chun-Lei Xiang; Jian-Wen Zhang; Yue-Hua Wang; Hang Sun
Journal:  PLoS One       Date:  2015-02-06       Impact factor: 3.240

Review 6.  Morphological Characteristics, Nutrients, and Bioactive Compounds of Zizania latifolia, and Health Benefits of Its Seeds.

Authors:  Ning Yan; Yongmei Du; Xinmin Liu; Cheng Chu; John Shi; Hongbo Zhang; Yanhua Liu; Zhongfeng Zhang
Journal:  Molecules       Date:  2018-06-28       Impact factor: 4.411

7.  Chromosome-level genome assembly of Zizania latifolia provides insights into its seed shattering and phytocassane biosynthesis.

Authors:  Ning Yan; Ting Yang; Xiu-Ting Yu; Lian-Guang Shang; De-Ping Guo; Yu Zhang; Lin Meng; Qian-Qian Qi; Ya-Li Li; Yong-Mei Du; Xin-Min Liu; Xiao-Long Yuan; Peng Qin; Jie Qiu; Qian Qian; Zhong-Feng Zhang
Journal:  Commun Biol       Date:  2022-01-11

8.  Genome Assembly of the Fungus Cochliobolus miyabeanus, and Transcriptome Analysis during Early Stages of Infection on American Wildrice (Zizania palustris L.).

Authors:  Claudia V Castell-Miller; Juan J Gutierrez-Gonzalez; Zheng Jin Tu; Kathryn E Bushley; Matthieu Hainaut; Bernard Henrissat; Deborah A Samac
Journal:  PLoS One       Date:  2016-06-02       Impact factor: 3.240

9.  Comparative whole-genome analysis reveals artificial selection effects on Ustilago esculenta genome.

Authors:  Zihong Ye; Yao Pan; Yafen Zhang; Haifeng Cui; Gulei Jin; Alice C McHardy; Longjiang Fan; Xiaoping Yu
Journal:  DNA Res       Date:  2017-12-01       Impact factor: 4.458

10.  Inferring the Origin of Cultivated Zizania latifolia, an Aquatic Vegetable of a Plant-Fungus Complex in the Yangtze River Basin.

Authors:  Yao Zhao; Zhiping Song; Lan Zhong; Qin Li; Jiakuan Chen; Jun Rong
Journal:  Front Plant Sci       Date:  2019-11-08       Impact factor: 5.753

  10 in total

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