Literature DB >> 19942137

The E1 mechanism in photo-induced beta-elimination reactions for green-to-red conversion of fluorescent proteins.

Hidekazu Tsutsui1, Hideaki Shimizu, Hideaki Mizuno, Nobuyuki Nukina, Toshiaki Furuta, Atsushi Miyawaki.   

Abstract

KikGR is a fluorescent protein engineered to display green-to-red photoconvertibility that is induced by irradiation with ultraviolet or violet light. Similar to Kaede and EosFP, two naturally occurring photoconvertible proteins, KikGR contains a His(62)-Tyr(63)-Gly(64) tripeptide sequence, which forms a green chromophore that can be photoconverted to a red one via formal beta-elimination and subsequent extension of a pi-conjugated system. Using a crystallizable variant of KikGR, we determined the structures of both the green and red state at 1.55 A resolution. The double bond between His(62)-C(alpha) and His(62)-C(beta) in the red chromophore is in a cis configuration, indicating that rotation along the His(62) C(alpha)-C(beta) bond occurs following cleavage of the His(62) N(alpha)-C(alpha) bond. This structural rearrangement provides evidence that the beta-elimination reaction governing the green-to-red photoconversion of KikGR follows an E1 (elimination, unimolecular) mechanism.

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Year:  2009        PMID: 19942137     DOI: 10.1016/j.chembiol.2009.10.010

Source DB:  PubMed          Journal:  Chem Biol        ISSN: 1074-5521


  13 in total

1.  A hinge migration mechanism unlocks the evolution of green-to-red photoconversion in GFP-like proteins.

Authors:  Hanseong Kim; Taisong Zou; Chintan Modi; Katerina Dörner; Timothy J Grunkemeyer; Liqing Chen; Raimund Fromme; Mikhail V Matz; S Banu Ozkan; Rebekka M Wachter
Journal:  Structure       Date:  2015-01-06       Impact factor: 5.006

2.  Photoconvertible Behavior of LSSmOrange Applicable for Single Emission Band Optical Highlighting.

Authors:  Herlinde De Keersmaecker; Eduard Fron; Susana Rocha; Takako Kogure; Atsushi Miyawaki; Johan Hofkens; Hideaki Mizuno
Journal:  Biophys J       Date:  2016-09-06       Impact factor: 4.033

3.  Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.

Authors:  Nadya V Pletneva; Sergei Pletnev; Alexey A Pakhomov; Rita V Chertkova; Vladimir I Martynov; Liya Muslinkina; Zbigniew Dauter; Vladimir Z Pletnev
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-07-13       Impact factor: 7.652

Review 4.  Chromophore transformations in red fluorescent proteins.

Authors:  Fedor V Subach; Vladislav V Verkhusha
Journal:  Chem Rev       Date:  2012-05-04       Impact factor: 60.622

Review 5.  Chromophore chemistry of fluorescent proteins controlled by light.

Authors:  Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Chem Biol       Date:  2014-05-13       Impact factor: 8.822

Review 6.  Red fluorescent proteins: chromophore formation and cellular applications.

Authors:  Atsushi Miyawaki; Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Struct Biol       Date:  2012-09-20       Impact factor: 6.809

7.  Molecular mechanism of a green-shifted, pH-dependent red fluorescent protein mKate variant.

Authors:  Qi Wang; Laura J Byrnes; Bo Shui; Ute F Röhrig; Avtar Singh; Dmitriy M Chudakov; Sergey Lukyanov; Warren R Zipfel; Michael I Kotlikoff; Holger Sondermann
Journal:  PLoS One       Date:  2011-08-22       Impact factor: 3.240

8.  Photocleavable proteins that undergo fast and efficient dissociation.

Authors:  Xiaocen Lu; Yurong Wen; Shuce Zhang; Wei Zhang; Yilun Chen; Yi Shen; M Joanne Lemieux; Robert E Campbell
Journal:  Chem Sci       Date:  2021-05-31       Impact factor: 9.825

9.  In cellulo evaluation of phototransformation quantum yields in fluorescent proteins used as markers for single-molecule localization microscopy.

Authors:  Sergiy Avilov; Romain Berardozzi; Mudalige S Gunewardene; Virgile Adam; Samuel T Hess; Dominique Bourgeois
Journal:  PLoS One       Date:  2014-06-10       Impact factor: 3.240

10.  Two-photon excited photoconversion of cyanine-based dyes.

Authors:  Sheldon J J Kwok; Myunghwan Choi; Brijesh Bhayana; Xueli Zhang; Chongzhao Ran; Seok-Hyun Yun
Journal:  Sci Rep       Date:  2016-03-31       Impact factor: 4.379

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