Literature DB >> 19938867

Heterodyne-detected dispersed vibrational echo spectroscopy.

Kevin C Jones1, Ziad Ganim, Andrei Tokmakoff.   

Abstract

We develop heterodyned dispersed vibrational echo spectroscopy (HDVE) and demonstrate the new capabilities in biophysical applications. HDVE is a robust ultrafast technique that provides a characterization of the real and imaginary components of third-order nonlinear signals with high sensitivity and single-laser-shot capability and can be used to extract dispersed pump-probe and dispersed vibrational echo spectra. Four methods for acquiring HDVE phase and amplitude spectra were compared: Fourier transform spectral interferometry, a new phase modulation spectral interferometry technique, and combination schemes. These extraction techniques were demonstrated in the context of protein amide I spectroscopy. Experimental HDVE and heterodyned free induction decay amide I spectra were explicitly compared to conventional dispersed pump-probe, dispersed vibrational echo, and absorption spectra. The new capabilities of HDVE were demonstrated by acquiring single-shot spectra and melting curves of ubiquitin and concentration-dependent spectra of insulin suitable for extracting the binding constant for dimerization. The introduced techniques will prove particularly useful in transient experiments, studying irreversible reactions, and micromolar concentration studies of small proteins.

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Year:  2009        PMID: 19938867     DOI: 10.1021/jp906256s

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  8 in total

1.  Oxidized Derivatives of 5-Methylcytosine Alter the Stability and Dehybridization Dynamics of Duplex DNA.

Authors:  Paul J Sanstead; Brennan Ashwood; Qing Dai; Chuan He; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2020-02-05       Impact factor: 2.991

2.  Folding of a heterogeneous β-hairpin peptide from temperature-jump 2D IR spectroscopy.

Authors:  Kevin C Jones; Chunte Sam Peng; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-02-04       Impact factor: 11.205

3.  A molecular interpretation of 2D IR protein folding experiments with Markov state models.

Authors:  Carlos R Baiz; Yu-Shan Lin; Chunte Sam Peng; Kyle A Beauchamp; Vincent A Voelz; Vijay S Pande; Andrei Tokmakoff
Journal:  Biophys J       Date:  2014-03-18       Impact factor: 4.033

4.  Time-resolved measurements of an ion channel conformational change driven by a membrane phase transition.

Authors:  Paul Stevenson; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-25       Impact factor: 11.205

5.  5-Carboxylcytosine and Cytosine Protonation Distinctly Alter the Stability and Dehybridization Dynamics of the DNA Duplex.

Authors:  Brennan Ashwood; Paul J Sanstead; Qing Dai; Chuan He; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2020-01-14       Impact factor: 2.991

6.  Direct observation of ground-state lactam-lactim tautomerization using temperature-jump transient 2D IR spectroscopy.

Authors:  Chunte Sam Peng; Carlos R Baiz; Andrei Tokmakoff
Journal:  Proc Natl Acad Sci U S A       Date:  2013-05-20       Impact factor: 11.205

7.  Determining Sequence-Dependent DNA Oligonucleotide Hybridization and Dehybridization Mechanisms Using Coarse-Grained Molecular Simulation, Markov State Models, and Infrared Spectroscopy.

Authors:  Michael S Jones; Brennan Ashwood; Andrei Tokmakoff; Andrew L Ferguson
Journal:  J Am Chem Soc       Date:  2021-10-13       Impact factor: 15.419

8.  A General Approach To Combine the Advantages of Collinear and Noncollinear Spectrometer Designs in Phase-Resolved Second-Order Nonlinear Spectroscopy.

Authors:  Tobias Garling; R Kramer Campen; Martin Wolf; Martin Thämer
Journal:  J Phys Chem A       Date:  2019-12-12       Impact factor: 2.781

  8 in total

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