Literature DB >> 19936829

Pseudomonas oleovorans subsp. lubricantis subsp. nov., and reclassification of Pseudomonas pseudoalcaligenes ATCC 17440T as later synonym of Pseudomonas oleovorans ATCC 8062 T.

Ratul Saha1, Cathrin Spröer, Brian Beck, Susan Bagley.   

Abstract

Isolate RS1(T) isolated from used metalworking fluid was found to be a Gram-negative, motile, and non-spore forming rod. Based on phylogenetic analyses with 16S rRNA, isolate RS1(T) was placed into the mendocina sublineage of Pseudomonas. The major whole cell fatty acids were C(18:1)omega7c (32.6%), C(16:0) (25.5%), and C(15:0) ISO 2OH/C(16:1)omega7c (14.4%). The sequence similarities of isolate RS1(T) based on gyrB and rpoD genes were 98.9 and 98.0% with Pseudomonas pseudoalcaligenes, and 98.5 and 98.1% with Pseudomonas oleovorans, respectively. The ribotyping pattern showed a 0.60 similarity with P. oleovorans ATCC 8062(T) and 0.63 with P. pseudoalcaligenes ATCC17440(T). The DNA G + C content of isolate RS1(T) was 62.2 mol.%. The DNA-DNA relatedness was 73.0% with P. oleovorans ATCC 8062(T) and 79.1% with P. pseudoalcaligenes ATCC 17440(T). On the basis of morphological, biochemical, and molecular studies, isolate RS1(T) is considered to represent a new subspecies of P. oleovorans. Furthermore, based on the DNA-DNA relatedness (>70%), chemotaxonomic, and molecular profile, P. pseudoalcaligenes ATCC 17440(T) and P. oleovorans ATCC 8062(T) should be united under the same name; according to the rules of priority, P. oleovorans, the first described species, is the earlier synonym and P. pseudoalcaligenes is the later synonym. As a consequence, the division of the species P. oleovorans into two novel subspecies is proposed: P. oleovorans subsp. oleovorans subsp. nov. (type strain ATCC 8062(T) = DSM 1045(T) = NCIB 6576(T)), P. oleovorans subsp. lubricantis subsp. nov. (type strain RS1(T) = ATCC BAA-1494(T) = DSM 21016(T)).

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19936829     DOI: 10.1007/s00284-009-9540-6

Source DB:  PubMed          Journal:  Curr Microbiol        ISSN: 0343-8651            Impact factor:   2.188


  12 in total

1.  Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.

Authors:  Erko Stackebrandt; Wilhelm Frederiksen; George M Garrity; Patrick A D Grimont; Peter Kämpfer; Martin C J Maiden; Xavier Nesme; Ramon Rosselló-Mora; Jean Swings; Hans G Trüper; Luc Vauterin; Alan C Ward; William B Whitman
Journal:  Int J Syst Evol Microbiol       Date:  2002-05       Impact factor: 2.747

2.  MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment.

Authors:  Sudhir Kumar; Koichiro Tamura; Masatoshi Nei
Journal:  Brief Bioinform       Date:  2004-06       Impact factor: 11.622

3.  A Study of the Nature, Growth and Control of Bacteria in Cutting Compounds.

Authors:  M Lee; A C Chandler
Journal:  J Bacteriol       Date:  1941-03       Impact factor: 3.490

4.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

5.  Studies on the spectrophotometric determination of DNA hybridization from renaturation rates.

Authors:  V A Huss; H Festl; K H Schleifer
Journal:  Syst Appl Microbiol       Date:  1983       Impact factor: 4.022

6.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

7.  The quantitative measurement of DNA hybridization from renaturation rates.

Authors:  J De Ley; H Cattoir; A Reynaerts
Journal:  Eur J Biochem       Date:  1970-01

8.  Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, rpoD and 16S rRNA genes.

Authors:  S Yamamoto; S Harayama
Journal:  Int J Syst Bacteriol       Date:  1998-07

9.  Genomic typing of Pseudomonas aeruginosa isolates by comparison of Riboprinting and PFGE: correlation of experimental results with those predicted from the complete genome sequence of isolate PAO1.

Authors:  Jeannie Botes; G Williamson; V Sinickas; V Gürtler
Journal:  J Microbiol Methods       Date:  2003-10       Impact factor: 2.363

10.  PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains.

Authors:  S Yamamoto; S Harayama
Journal:  Appl Environ Microbiol       Date:  1995-03       Impact factor: 4.792

View more
  10 in total

1.  Development of a real-time TaqMan assay to detect mendocina sublineage Pseudomonas species in contaminated metalworking fluids.

Authors:  Ratul Saha; Robert S Donofrio; Susan T Bagley
Journal:  J Ind Microbiol Biotechnol       Date:  2010-05-11       Impact factor: 3.346

2.  Oblitimonas alkaliphila gen. nov., sp. nov., in the family Pseudomonadaceae, recovered from a historical collection of previously unidentified clinical strains.

Authors:  Adam M Drobish; Brian D Emery; Anne M Whitney; Ana C Lauer; Maureen G Metcalfe; John R McQuiston
Journal:  Int J Syst Evol Microbiol       Date:  2016-05-11       Impact factor: 2.747

3.  Pseudomonas lopnurensis sp. nov., an endophytic bacterium isolated from Populus euphratica at the ancient Ugan river.

Authors:  Tursunay Mamtimin; Nusratgul Anwar; Mehfuzem Abdurahman; Marygul Kurban; Manziram Rozahon; Hormathan Mamtimin; Buayshem Hamood; Erkin Rahman; Min Wu
Journal:  Antonie Van Leeuwenhoek       Date:  2021-02-15       Impact factor: 2.271

4.  Control of a pyrimidine ribonucleotide salvage pathway in Pseudomonas oleovorans.

Authors:  Ramneetpreet Gill; Thomas P West
Journal:  Arch Microbiol       Date:  2022-06-10       Impact factor: 2.552

5.  Phylogenomics and systematics in Pseudomonas.

Authors:  Margarita Gomila; Arantxa Peña; Magdalena Mulet; Jorge Lalucat; Elena García-Valdés
Journal:  Front Microbiol       Date:  2015-03-18       Impact factor: 5.640

6.  Complete genome sequence of Pseudomonas alcaliphila JAB1 (=DSM 26533), a versatile degrader of organic pollutants.

Authors:  Jakub Ridl; Jachym Suman; Serena Fraraccio; Miluse Hradilova; Michal Strejcek; Tomas Cajthaml; Andrea Zubrova; Tomas Macek; Hynek Strnad; Ondrej Uhlik
Journal:  Stand Genomic Sci       Date:  2018-02-01

7.  Identification of Microorganisms from Several Surfaces by MALDI-TOF MS: P. aeruginosa Is Leading in Biofilm Formation.

Authors:  Ehsan Asghari; Annika Kiel; Bernhard Peter Kaltschmidt; Martin Wortmann; Nadine Schmidt; Bruno Hüsgen; Andreas Hütten; Cornelius Knabbe; Christian Kaltschmidt; Barbara Kaltschmidt
Journal:  Microorganisms       Date:  2021-05-04

8.  Microbial diversity and activity in the Nematostella vectensis holobiont: insights from 16S rRNA gene sequencing, isolate genomes, and a pilot-scale survey of gene expression.

Authors:  Jia Y Har; Tim Helbig; Ju H Lim; Samodha C Fernando; Adam M Reitzel; Kevin Penn; Janelle R Thompson
Journal:  Front Microbiol       Date:  2015-09-02       Impact factor: 5.640

9.  Identification and characterisation of short chain rhamnolipid production in a previously uninvestigated, non-pathogenic marine pseudomonad.

Authors:  Matthew S Twigg; L Tripathi; A Zompra; K Salek; V U Irorere; T Gutierrez; G A Spyroulias; R Marchant; I M Banat
Journal:  Appl Microbiol Biotechnol       Date:  2018-07-10       Impact factor: 4.813

10.  Diversity of bacteria associated with corn roots inoculated with Canadian woodland soils, and description of Pseudomonas aylmerense sp. nov.

Authors:  Caetanie F Tchagang; Renlin Xu; David Overy; Barbara Blackwell; Denise Chabot; Keith Hubbard; Cyr Lézin Doumbou; Eden S P Bromfield; James T Tambong
Journal:  Heliyon       Date:  2018-08-31
  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.