| Literature DB >> 19936302 |
Kristina Yeghiazaryan1, Josef Flammer, Selim Orgül, Kerstin Wunderlich, Olga Golubnitschaja.
Abstract
PURPOSE: There is growing evidence that vasospatic individuals could be predisposed to develop glaucoma. Vasospastic deregulation is ensuing in activation of circulating leukocytes. In previous studies using "gene-hunting" strategies, we demonstrated stable alterations in gene expression profiles of circulating leukocytes isolated from glaucoma patients with vascular deregulation when compared to healthy individuals with no history of glaucomatous damage. The goal of this study was to look for possible similarities in gene expression profiles of circulating leukocytes in vasospastic individuals and glaucoma patients.Entities:
Mesh:
Year: 2009 PMID: 19936302 PMCID: PMC2779057
Source DB: PubMed Journal: Mol Vis ISSN: 1090-0535 Impact factor: 2.367
Primer sets and corresponding lengths of the expected PCR products.
| TAAGGAGAAGCTGTGCTACG | TGAAGGTAGTTTCGTGGATG | 203 | GsuI, LguI (SapI) | |
| TCATCTCTCTGCTGGCTATC | CTTGGTGCGTAGCTTCTG | 347 | RsaI, XbaI | |
| AGTCACCTATGGCAACGAC | GCCTCACACTTCACTGTCA | 216 | AluI, PstI | |
| ACCACCAAGACAACTGTGAG | CACGCAAATGCTTAATCTTC | 244 | CfrI (EaeI), PstI | |
| ATCTGTGACGGGAACTTTGA | CTTCCTCTCGTAGGCAGTG | 174 | HhaI, HphI |
Figure 1Expression Array image. The image of 588 genes (see AtlasTM Human Cardiovascular Array in Methods) is shown specifically for the group of individuals with vascular deregulation. The double spots marked with black frames show the most stable expressional difference in vascular deregulation (VD), normal-tension (NTG) and high-tension (HTG) glaucoma patients groups versus controls. These double-spots are zoomed for the groups tested (ZOOM), and the names of corresponding genes as well as their positions in Atlas are given.
Numbers of genes an expression of which is either differential or equal among the groups tested as shown by “Expression array”.
| NTG→146 | Control →528 | NTG→109 |
| HTG →68 | NTG→48 | K→60 |
| VD→60 | HTG→43 | HTG→43 |
| NTG = HTG→53 | NTG = HTG→21 |
Thereby, 108 genes were found to be differentially expressed between NTG and HTG groups. 34 genes demonstrated similar alteration for vasospastic individuals (VD) and both glaucoma-patient groups when compared to the healthy controls (see these genes listed in Table 3).
Differentially expressed genes versus controls.
| A7d increased | P2Y purinoceptor 7 (P2Y7); leukotriene B4 receptor; Chemoattractant receptor-like1 (CMKRL1) | Other Receptors (by Ligands) G Protein-Coupled Receptors | ||
| A7e increased | Retinoic acid receptor gamma 1 (RAR-gamma 1; RARG) | Transcription Activator & Repressors; Hormone Receptors; Nuclear Receptors | ||
| B1n increased | Androgen receptor coactivator 70-kDa subunit (ARA70) | Transcription Activator & Repressors | ||
| B4c increased | G protein-activated inward potassium channel 4 (GIRK4); heart K+/ATP channel (KATP1); cardiac inward rectifyer (CIR); KIR3.4 | Voltage-gated Ion Channels | ||
| B4d increased | Sodium/calcium exchanger 1 precursor; Na+/Ca2+-exchange protein 1 | Symporters & Antiporters | ||
| B4e increased | Multidrug resistance protein 3 (MDR3); P-Glycoprotein 3 (PGY3) | Drug-Resistance Proteins; Xenobic Transporters | ||
| B5f increased | Endothelial nitric oxide synthase (EC-NOS) | Other Metabolism Enzymes; Other Intracellular Transducers, Effectors & Modulators | ||
| B6d increased | Intercellular adhesion molecule 1 precursor (ICAM1); major group rhinovirus receptor; CD54 antigen | Matrix Adhesion Receptors | ||
| 7g increased | Calcium & integrin-binding protein (CIB) | Calcium-Binding Proteins | ||
| 1g increased | Cadherin 7 (CDH7) | Cell Surface Antigens; Cell-Cell Adhesion Receptors | ||
| 1h increased | Intestinal peptide-associated transporter 1 (HPT1) | Other Cell Adhesion proteins; Other Cell Adhesion Proteins; Other Facilitated Diffusion proteins | ||
| 2i increased | GAP junction alpha-5 protein | Cell-Cell Adhesion Receptors; Other Membrane Channels & Transporters | ||
| 3m increased | Integrin beta 2 (ITGB2); cell surface adhesion glycoprotiens LFA-1/CR3/p150, 95 beta subunit precursor; CD18 antigen; Complement receptor C3 beta subunit | Cell-Cell Adhesion Receptors | ||
| 1m increased | Cardiac LIM domain protein; muscle LIM protein; cystein-rich protein 3 (CRP3); LIM-only protein 4 | Basic Transcription Factors; Other Transcription Proteins; DNA Synthesis, Recombination & Repair Proteins | ||
| 1n increased | Cardiotrophin-1 (CT1) | Growth Factors, Cytokines & Chemokines | ||
| 2n increased | Matrix metalloproteinase 16 (MMP-16) | Chromatin Proteins; Metalloproteinases | ||
| 4a increased | TIMP-3 | Extracellular Matrix Proteins; Proteinase Inhibitor | ||
| 4b increased | TIMP-4 | Extracellular Matrix Proteins; Proteinase Inhibitor | ||
| 4d increased | Sterol regulatory element-binding transcription factor 1 | Basic Transcription Factors; Other Apoptosis-Associated Proteins | ||
| 4e increased | Sterol regulatory element-binding transcription factor 2 | Basic Transcription Factors; Other Apoptosis-Associated Proteins | ||
| 5h increased | Rab geranylgeranyl transferase bety subunit | Trafficking & Targeting Proteins; Protein Modification Enzymes; GTP/GDP Exchangers & GTPase Activity Modulators | ||
| 6m decreased | Muscle-specific Dnase I-like precursor (Dnase 1L1; DNL 1L); Dnase X | DNA Synthesis, Recombination & Repair Proteins; Apoptosis-Associated Proteins | ||
| 1b increased | Lanosterol synthase (LSS); oxidosqualene lanosterol cyclase (OSC) | Complex Lipid Metabolism | ||
| 3n increased | NADPH-cytochrome p450 reductase | Xenobic Metabolism | ||
| 4g increased | Steroid 5 alpha reductase 1 (SRD5A1); 3-oxo-5-alpha steroid 4 dehydrogenase 1 | Complex Lipid Metabolism | ||
| 4h increased | Steroid 5-alpha reductase 2 (SRD5A2); 3-oxo-5-alpha steroid 4 dehydrogenase 2 | Complex Lipid Metabolism | ||
| 2d increased | Pregnane X receptor (PXR) | Hormone Receptors; Nuclear Receptors | ||
| F2e increased | Estrogen-related receptor gamma | Hormone Receptors; Nuclear Receptors | ||
| F2f increased | Nuclear receptor subfamily 4 group A member 2 (NR4A2); nuclear receptor-related protein 1 (NURR1); transcriptionally inducuble nuclear receptor (TINUR); NOT | Hormone Receptors; Nuclear Receptors; Transcription Activators & Repressors | ||
| 2i increased | Orphan nuclear receptor TR4; nuclear receptor subfamily 2 group c member 2 (NR2C2); TAK1 | Orphan Receptors; Nuclear Receptors; Transcription Activators & Repressors | ||
| 3a increased | RAR-related orphan receptor C | Orphan Receptors; Nuclear Receptors; Transcription Activators & Repressors | ||
| 3e increased | LX receptor alpha (LXR alpha) | Orphan Receptors | ||
| 3i increased | Platelet-activating factor acetylhydrolase IB alpha subunit | Other Metabolism Enzymes | ||
| 7c increased | Myocyte-specific enhancer factor 2A (MEF2A); serum response factor-like protein 1 | Basic Transcription Factors | ||
Differentially expressed genes (altogether 34 ones as also summarized in Table 1) versus controls, the transcriptional levels of which were similar for VD, NTG, and HTG groups; the most significant differences compared to controls are given in thick letter. “Expression Array” (“EA”)-image is given in Figure 1; “exp. difference” means an alteration in transcriptional level compared to that of control.
Figure 2Comparative real-time PCR. The measurements for the most stable alterations (see the “Expression array” images as given in Figure 1) were performed in glaucoma patients compared to controls. All measurements have been performed by a blind study. The names of the encrypted genes are following: the gene 1=P2Y (purinoceptor 7); the gene 2=ICAM 1 (intercellular adhesion molecule 1); the gene 13=Na+/Ca2+ EP1 (Na+/Ca2+ exchange protein 1); the gene 22=MT1-MMP (membrane type 1 matrix metalloproteinase).
Figure 3Overview of protein expression profiling. The diagram demonstrates the overlap in molecular mechanisms among single pathologies according to the similarities in gene expression patterns in vascular deregulation (VD), normal-tension (NTG) and high-tension (HTG) glaucoma patients groups. Single disorders demonstrate some pathology-characteristic expressions marked by the corresponding symbol, e.g., NTG. Further, there are partial expression overlaps between two of three pathologies symbolized by the corresponding pair, e.g., NTG & HTG. The similarities among all three groups (NTG & HTG & VD) of comparison are considered as the central issue that this study is focused on. Altogether 34 genes that create this overlap are summarized in Table 3, providing the clue to the molecular pathomechanisms that potentially predispose vasospastic individuals to the glaucomatous pathology.