| Literature DB >> 19936273 |
I Ravikumar1, P S Lakshminarayanan, E Suresh, Pradyut Ghosh.
Abstract
Structural aspects of the binding of inorganic anions such as class="Chemical">perchlorate,Entities:
Keywords: anion receptor; cryptand; molecular recognition; proton cage
Year: 2009 PMID: 19936273 PMCID: PMC2779740 DOI: 10.3762/bjoc.5.41
Source DB: PubMed Journal: Beilstein J Org Chem ISSN: 1860-5397 Impact factor: 2.883
Figure 1Octaaminocryptand with p-xylyl spacers L, with m-xylyl spacers L.
Figure 2ORTEP diagram of the [H6L]6+ with encapsulated ClO4− (40% probability factor for the thermal ellipsoids and hydrogen atoms attached to the protonated nitrogen atoms only are shown for clarity).
Selected non-bonded distances (Å) of complex 1.
| N···N Distance [Å] | |
| N2···C2 | 1.494(8) |
| N2···C3 | 1.508(8) |
| N3···C10 | 1.484(9) |
| N3···C11 | 1.485(9) |
| N5···C14 | 1.502(8) |
| N5···C15 | 1.502(8) |
| N6···C22 | 1.493(8) |
| N6···C23 | 1.505(8) |
| N7···C26 | 1.489(8) |
| N7···C27 | 1.497(3) |
| N8···C34 | 1.497(8) |
| N8···C35 | 1.491(8) |
Figure 3(a) Mercury diagram depicting the interactions of the encapsulated ClO4− within the [H6L]6+ and the surrounding water molecules. (b) Mercury diagram depicting the interactions of the encapsulated ClO4− within the hexaprotonated tere-cryptand moiety and the surrounding water molecules viewed down the bridgehead nitrogen atoms. Hydrogen atoms other than acidic, external perchlorates and lattice water molecules are omitted for clarity.
Selected hydrogen-bond lengths (Å) and bond angles (°) of complex 1.
| D–H···A | D–H [Å] | H···A [Å] | D···A [Å] | D–H···A [°] |
| N2−H2C···O25 | 0.92 | 1.90 | 2.818(7) | 172 |
| N5−H5C···O25 | 0.92 | 1.98 | 2.855(7) | 159 |
| N5–H5D···O26 | 0.92 | 1.97 | 2.865(7) | 163 |
| N7–H7D···O26 | 0.92 | 2.03 | 2.929(7) | 167 |
| N3–H3C···O27 | 0.92 | 1.96 | 2.869(9) | 168 |
| N6–H6D···O27 | 0.92 | 1.96 | 2.845(8) | 179 |
| N6–H6C···O28 | 0.92 | 1.96 | 2.848(7) | 162 |
| N8–H8D···O28 | 0.92 | 1.98 | 2.897(9) | 172 |
| N2–H2D···O29 | 0.92 | 2.04 | 2.909(8) | 158 |
| N7–H7C···O29 | 0.92 | 1.93 | 2.840(8) | 170 |
Selected hydrogen-bond lengths (Å) and bond angles (°) of complex 1.
| D–H···A | D–H [Å] | H···A [Å] | D···A [Å] | D–H···A [°] |
| N3−H3D···O5a | 0.92 | 2.04 | 2.932(9) | 163 |
| N8−H8D···O5a | 0.92 | 2.26 | 3.063(8) | 146 |
a −x, −1/2+y, 1/2−z.
Selected non-bonded distance (Å) of complex 1.
| N···N Distance [Å] | |
| N2···N5 | 4.530 |
| N2···N7 | 4.385 |
| N5···N7 | 4.548 |
| N3···N6 | 4.529 |
| N3···N8 | 4.427 |
| N6···N8 | 4.474 |
Figure 4ORTEP diagram with atom numbering scheme depicting the octaprotonated L with disordered HSO4− monoanion inside the cavity (25% probability factor for the thermal ellipsoids and only hydrogen atoms attached to the amino nitrogens are shown in the figure for clarity).
Selected non-bonded distance (Å) of complex 2.
| N···N Distance [Å] | |
| N2···N6 | 6.548 |
| N2···N7 | 5.791 |
| N6···N7 | 5.809 |
| N3···N5 | 5.732 |
| N3···N8 | 6.078 |
| N5···N8 | 6.588 |
Figure 5Mercury diagram depicting the encapsulation of disordered hydrogen sulfate in the cavity of [H8L]8+ through various hydrogen bonding interactions.
Selected hydrogen-bond lengths (Å) and bond angles (°) of complex 2.
| D–H···A | D–H [Å] | H···A [Å] | D···A [Å] | D–H···A [°] |
| N1−H1D···O1 | 0.91 | 1.90 | 2.809(7) | 178 |
| N4−H4D···O2 | 0.91 | 2.02 | 2.896(7) | 162 |
| N3–H3C···O2 | 0.90 | 2.35 | 2.931(8) | 123 |
| N7–H7D···O1 | 0.90 | 2.06 | 2.826(10) | 142 |
| C14–H14A···O3A | 0.97 | 2.43 | 3.360(2) | 160 |
| C23–H23B···O4A | 0.97 | 2.37 | 3.320(17) | 167 |
Figure 6Interactions of the protonated amino nitrogen centers of the [H8L]8+ moiety with the surrounding hydrogen sulfate and water molecules.
Figure 7ORTEP diagram depicting the octaprotonated [H8L]8+ moiety with the encapsulated disordered HSiF6− monoanion with atom numbering scheme (25% probability factor for the thermal ellipsoids and only hydrogen atoms attached to the amino nitrogens are shown for clarity).
Figure 8Mercury diagram depicting the encapsulation of the disordered HSiF6− inside the [H8L]8+ moiety along with various hydrogen bonding interactions. Only hydrogen atoms having interactions with encapsulated anion are shown for clarity.
Selected hydrogen-bond lengths (Å) and bond angles (°) of complex 3.
| D–H···A | D–H [Å] | H···A [Å] | D···A [Å] | D–H···A [°] |
| N1−H···F1 | 0.91 | 1.88 | 2.756(9) | 161 |
| N3−H3D···F2A | 0.90 | 1.92 | 2.789(11) | 163 |
| N4–H4···F2A | 0.91 | 2.27 | 3.053(11) | 143 |
| N4–H4···F3 | 0.91 | 2.12 | 2.904(10) | 143 |
| N4–H4···F4 | 0.91 | 2.25 | 2.988(8) | 137 |
| N6–H6D···F3 | 0.90 | 1.86 | 2.726(8) | 160 |
| C14–H14B···F1 | 0.97 | 2.41 | 3.190(10) | 137 |
| C26–H26B···F5 | 0.97 | 2.39 | 3.318(14) | 161 |
| C26–H26B···F6 | 0.97 | 2.45 | 3.180(14) | 132 |
Figure 9Mercury diagram depicting the interaction of the [H8L]8+ with the surrounding molecules via N–H···F and N–H···O hydrogen bonds.