Literature DB >> 19928885

Nonadiabatic hybrid quantum and molecular mechanic simulations of azobenzene photoswitching in bulk liquid environment.

Marcus Böckmann1, Nikos L Doltsinis, Dominik Marx.   

Abstract

A nonadiabatic hybrid quantum and molecular mechanical (na-QM/MM) molecular dynamics scheme has been implemented recently combining the nonadiabatic Car-Parrinello molecular dynamics method by Doltsinis and Marx [Phys. Rev. Lett. 2002, 88, 166402] with the QM/MM coupling approach by Laio et al. [J. Chem. Phys. 2002, 116, 6941]. Here an extensive validation of the underlying, density functional theory based, electronic structure methods by comparison to CASPT2 ab initio data is presented for the case of azobenzene. The "on the fly" na-QM/MM method is then applied to study Z-->E and E-->Z photoisomerization of azobenzene in a bulk liquid environment. The isomerization mechanism is found to be a pedal motion of the central CN horizontal lineNC group in both cases. While the Z-->E reaction is barely affected by the environment, E-->Z photoisomerization is slowed down considerably in the liquid compared to the gas phase. This effect is due to the fact that reorientation of the phenyl rings is significantly hindered in the liquid by steric nearest neighbor interactions. Nonradiative decay is found to be substantially faster for Z-AB (subpicosecond regime) than for E-AB (picosecond regime). The main molecular motions responsible for nonadiabatic coupling have been identified as the oscillations in the NN and CN bond lengths, the CNN bond angles, and the CNNC dihedral angle.

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Year:  2010        PMID: 19928885     DOI: 10.1021/jp910103b

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  10 in total

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Journal:  Biophys J       Date:  2014-08-19       Impact factor: 4.033

2.  Molecular mechanics modeling of azobenzene-based photoswitches.

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Journal:  J Mol Model       Date:  2011-10-28       Impact factor: 1.810

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4.  Photoisomerization of Arylazopyrazole Photoswitches: Stereospecific Excited-State Relaxation.

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Journal:  Angew Chem Int Ed Engl       Date:  2016-10-06       Impact factor: 15.336

5.  Photoinduced Pedalo-Type Motion in an Azodicarboxamide-Based Molecular Switch.

Authors:  Saeed Amirjalayer; Alberto Martinez-Cuezva; Jose Berna; Sander Woutersen; Wybren Jan Buma
Journal:  Angew Chem Int Ed Engl       Date:  2017-12-07       Impact factor: 15.336

6.  Thiophenylazobenzene: An Alternative Photoisomerization Controlled by Lone-Pair⋅⋅⋅π Interaction.

Authors:  Chavdar Slavov; Chong Yang; Andreas H Heindl; Hermann A Wegner; Andreas Dreuw; Josef Wachtveitl
Journal:  Angew Chem Int Ed Engl       Date:  2019-11-18       Impact factor: 15.336

7.  N═N Bond Cleavage by Tantalum Hydride Complexes: Mechanistic Insights and Reactivity.

Authors:  Elena Álvarez-Ruiz; Jorge J Carbó; Manuel Gómez; Cristina Hernández-Prieto; Alberto Hernán-Gómez; Avelino Martín; Miguel Mena; Josep M Ricart; Antoni Salom-Català; Cristina Santamaría
Journal:  Inorg Chem       Date:  2021-12-10       Impact factor: 5.165

8.  Nonadiabatic photodynamics of a retinal model in polar and nonpolar environment.

Authors:  Matthias Ruckenbauer; Mario Barbatti; Thomas Müller; Hans Lischka
Journal:  J Phys Chem A       Date:  2013-03-21       Impact factor: 2.781

9.  Azobenzene as a photoregulator covalently attached to RNA: a quantum mechanics/molecular mechanics-surface hopping dynamics study.

Authors:  Padmabati Mondal; Giovanni Granucci; Dominique Rastädter; Maurizio Persico; Irene Burghardt
Journal:  Chem Sci       Date:  2018-04-27       Impact factor: 9.825

10.  Fluorinated azobenzenes as supramolecular halogen-bonding building blocks.

Authors:  Esther Nieland; Oliver Weingart; Bernd M Schmidt
Journal:  Beilstein J Org Chem       Date:  2019-08-23       Impact factor: 2.883

  10 in total

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