Literature DB >> 19924872

Properties of hydrated excess protons near phospholipid bilayers.

Takefumi Yamashita1, Gregory A Voth.   

Abstract

The behavior of the hydrated excess proton near different lipid membranes is studied with the third generation of the multistate empirical valence bond (MS-EVB3) model [Wu, Y. J.; Chen, H. N.; Wang, F.; Paesani, F.; Voth, G. A. J. Phys. Chem. B 2008, 112, 467]. Dioleoylphosphatidylcholine (DOPC), dioleoylphosphatidylethanolamine (DOPE), and dioleoylphosphatidylglycerol (DOPG) are selected as example lipids. In spite of the differences of the head groups, the molecular dynamics simulations show that all the lipid membranes have a proton-collecting antenna effect with no free energy barrier between the bulk water and interface regions. By comparison with classical hydronium model simulations, it is found that an appropriate description of proton Grotthuss shuttling and associated charge defect delocalization are necessary to obtain the correct free energy profile for the hydrated excess proton. In addition, nanosecond time scale sampling is essential to evaluate the free energy profiles, because certain slow motions are needed to stabilize the excess proton in the deep membrane interface region. It is also found that the lateral diffusion coefficients are 1 order of magnitude smaller in the interface region than in bulk water for all the lipids. These coefficients are almost the same as those of the lipid head groups. Finally, since the lipid phosphates may possibly be protonated due to the proton antenna effect of the membrane, phosphate group protonation is investigated and discussed within the MS-EVB framework.

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Year:  2010        PMID: 19924872     DOI: 10.1021/jp908768c

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  22 in total

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4.  Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance.

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5.  Exploring fast proton transfer events associated with lateral proton diffusion on the surface of membranes.

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6.  Anomalous surface diffusion of protons on lipid membranes.

Authors:  Maarten G Wolf; Helmut Grubmüller; Gerrit Groenhof
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Review 7.  Competing for the same space: protons and alkali ions at the interface of phospholipid bilayers.

Authors:  Evelyne Deplazes; Jacqueline White; Christopher Murphy; Charles G Cranfield; Alvaro Garcia
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8.  Proton Dynamics at the Membrane Surface.

Authors:  Robert B Gennis
Journal:  Biophys J       Date:  2016-05-10       Impact factor: 4.033

9.  Insights into the mechanism of proton transport in cytochrome c oxidase.

Authors:  Takefumi Yamashita; Gregory A Voth
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10.  Computationally Efficient Multiconfigurational Reactive Molecular Dynamics.

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