Literature DB >> 19923750

Crystallization and preliminary X-ray crystallographic analysis of gamma-carboxymucolactone decarboxylase from Sulfolobus solfataricus.

Ho Yeon Lee1, Jin Kuk Yang.   

Abstract

gamma-Carboxymucolactone decarboxylase (gamma-CMD; EC 4.1.1.44) catalyzes the conversion of gamma-carboxymucolactone to beta-ketoadipate enol-lactone in the beta-ketoadipate pathway, which is a key part of the degradation process of aromatic compounds in bacteria and in some eukaryotes such as fungi and yeast. gamma-CMD from the thermophilic archaeon Sulfolobus solfataricus (Ss gamma-CMD) is encoded by the pcaC gene and is composed of 139 amino-acid residues with a molecular mass of 15 945 Da. Ss gamma-CMD was crystallized and X-ray data were collected to 2.40 angstrom resolution. The crystal belonged to space group P4(3)2(1)2, with unit-cell parameters a = b = 66.66, c = 184.82 angstrom. The Matthews coefficient and solvent content were estimated to be 2.14 angstrom(3) Da(-1) and 42.6%, respectively, assuming that the asymmetric unit contained three recombinant protein molecules.

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Year:  2009        PMID: 19923750      PMCID: PMC2777058          DOI: 10.1107/S1744309109042535

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  8 in total

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Authors: 
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1994-09-01

2.  Crystal structure of the conserved protein TTHA0727 from Thermus thermophilus HB8 at 1.9 A resolution: A CMD family member distinct from carboxymuconolactone decarboxylase (CMD) and AhpD.

Authors:  Kaori Ito; Ryoichi Arai; Emiko Fusatomi; Tomomi Kamo-Uchikubo; Shin-Ichi Kawaguchi; Ryogo Akasaka; Takaho Terada; Seiki Kuramitsu; Mikako Shirouzu; Shigeyuki Yokoyama
Journal:  Protein Sci       Date:  2006-04-05       Impact factor: 6.725

Review 3.  The beta-ketoadipate pathway and the biology of self-identity.

Authors:  C S Harwood; R E Parales
Journal:  Annu Rev Microbiol       Date:  1996       Impact factor: 15.500

4.  Relationships among enzymes of the beta-ketoadipate pathway. 3. Properties of crystalline gamma-carboxymuconolactone decarboxylase from Pseudomonas putida.

Authors:  D Parke; R B Meagher; L N Ornston
Journal:  Biochemistry       Date:  1973-08-28       Impact factor: 3.162

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  The fluorene catabolic linear plasmid in Terrabacter sp. strain DBF63 carries the beta-ketoadipate pathway genes, pcaRHGBDCFIJ, also found in proteobacteria.

Authors:  Hiroshi Habe; Jin-Sung Chung; Ayako Ishida; Kano Kasuga; Kazuki Ide; Tetsuo Takemura; Hideaki Nojiri; Hisakazu Yamane; Toshio Omori
Journal:  Microbiology       Date:  2005-11       Impact factor: 2.777

7.  The Pfam protein families database.

Authors:  Robert D Finn; John Tate; Jaina Mistry; Penny C Coggill; Stephen John Sammut; Hans-Rudolf Hotz; Goran Ceric; Kristoffer Forslund; Sean R Eddy; Erik L L Sonnhammer; Alex Bateman
Journal:  Nucleic Acids Res       Date:  2007-11-26       Impact factor: 16.971

8.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

  8 in total
  1 in total

1.  Structure of lpg0406, a carboxymuconolactone decarboxylase family protein possibly involved in antioxidative response from Legionella pneumophila.

Authors:  Xiaofang Chen; Yanjin Hu; Bo Yang; Xiaojian Gong; Nannan Zhang; Liwen Niu; Yun Wu; Honghua Ge
Journal:  Protein Sci       Date:  2015-10-10       Impact factor: 6.725

  1 in total

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