Literature DB >> 19923723

Structure of an N-terminally truncated Nudix hydrolase DR2204 from Deinococcus radiodurans.

A M D Gonçalves1, E Fioravanti, M Stelter, S McSweeney.   

Abstract

Nudix pyrophosphatases are a well represented protein family in the Deinococcus radiodurans genome. These hydrolases, which are known to be enzymatically active towards nucleoside diphosphate derivatives, play a role in cleansing the cell pool of potentially deleterious damage products. Here, the structure of DR2204, the only ADP-ribose pyrophosphatase in the D. radiodurans genome that is known to be active towards flavin adenosine dinucleotide (FAD), is presented at 2.0 angstrom resolution.

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Year:  2009        PMID: 19923723      PMCID: PMC2777031          DOI: 10.1107/S1744309109037191

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  36 in total

1.  The structure of ADP-ribose pyrophosphatase reveals the structural basis for the versatility of the Nudix family.

Authors:  S B Gabelli; M A Bianchet; M J Bessman; L M Amzel
Journal:  Nat Struct Biol       Date:  2001-05

2.  The Rossmann Fourier autoindexing algorithm in MOSFLM.

Authors:  H R Powell
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1999-10

3.  Structure of a coenzyme A pyrophosphatase from Deinococcus radiodurans: a member of the Nudix family.

Authors:  Lin-Woo Kang; Sandra B Gabelli; Mario A Bianchet; Wen Lian Xu; Maurice J Bessman; L Mario Amzel
Journal:  J Bacteriol       Date:  2003-07       Impact factor: 3.490

4.  MOLPROBITY: structure validation and all-atom contact analysis for nucleic acids and their complexes.

Authors:  Ian W Davis; Laura Weston Murray; Jane S Richardson; David C Richardson
Journal:  Nucleic Acids Res       Date:  2004-07-01       Impact factor: 16.971

5.  WHAT IF: a molecular modeling and drug design program.

Authors:  G Vriend
Journal:  J Mol Graph       Date:  1990-03

Review 6.  The Nudix hydrolase superfamily.

Authors:  A G McLennan
Journal:  Cell Mol Life Sci       Date:  2006-01       Impact factor: 9.261

Review 7.  The MutT proteins or "Nudix" hydrolases, a family of versatile, widely distributed, "housecleaning" enzymes.

Authors:  M J Bessman; D N Frick; S F O'Handley
Journal:  J Biol Chem       Date:  1996-10-11       Impact factor: 5.157

8.  Structural studies of the Nudix hydrolase DR1025 from Deinococcus radiodurans and its ligand complexes.

Authors:  Wasantha Ranatunga; Emma E Hill; Jana L Mooster; Elizabeth L Holbrook; Ursula Schulze-Gahmen; WenLian Xu; Maurice J Bessman; Steven E Brenner; Stephen R Holbrook
Journal:  J Mol Biol       Date:  2004-05-21       Impact factor: 5.469

9.  Interactions of the products, 8-oxo-dGMP, dGMP, and pyrophosphate with the MutT nucleoside triphosphate pyrophosphohydrolase.

Authors:  Vibhor Saraswat; Michael A Massiah; Gregory Lopez; L Mario Amzel; Albert S Mildvan
Journal:  Biochemistry       Date:  2002-12-31       Impact factor: 3.162

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

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  2 in total

1.  The evolution of function within the Nudix homology clan.

Authors:  John R Srouji; Anting Xu; Annsea Park; Jack F Kirsch; Steven E Brenner
Journal:  Proteins       Date:  2017-03-16

2.  Characterization of a non-nudix pyrophosphatase points to interplay between flavin and NAD(H) homeostasis in Saccharomyces cerevisiae.

Authors:  Joseph H Lynch; Na Sa; Sompop Saeheng; Nadia Raffaelli; Sanja Roje
Journal:  PLoS One       Date:  2018-06-14       Impact factor: 3.240

  2 in total

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