Literature DB >> 19921453

On the information expressed in enzyme primary structure: lessons from Ribonuclease A.

Daniel J Graham1, Jessica L Greminger.   

Abstract

The information expressed in an enzyme's primary structure is investigated. Brownian computations are directed at Ribonuclease A (RNase A) so as to quantify the information at the atom/covalent bond level. The information content and distribution are crucial because the primary structure underpins the molecule's chemical functions. Brownian computation data are illustrated for the native protein, mutants, and sequence isomers. The results identify signature features of the active protein on new information grounds. The same tools offer rapid screening of proteins and polypeptides whereby several examples are illustrated.

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Year:  2009        PMID: 19921453     DOI: 10.1007/s11030-009-9211-3

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  31 in total

1.  Ribonuclease A.

Authors:  Ronald T. Raines
Journal:  Chem Rev       Date:  1998-05-07       Impact factor: 60.622

2.  Modelling of carbonic anhydrase inhibitory activity of sulfonamides using molecular negentropy.

Authors:  Vijay K Agrawal; Padmakar V Khadikar
Journal:  Bioorg Med Chem Lett       Date:  2003-02-10       Impact factor: 2.823

3.  Information content in organic molecules: quantification and statistical structure via Brownian processing.

Authors:  Daniel J Graham; Christopher Malarkey; Matthew V Schulmerich
Journal:  J Chem Inf Comput Sci       Date:  2004 Sep-Oct

4.  A model for the recognition of protein kinases based on the entropy of 3D van der Waals interactions.

Authors:  Humberto Gonzalez-Díaz; Liane Saiz-Urra; Reinaldo Molina; Lourdes Santana; Eugenio Uriarte
Journal:  J Proteome Res       Date:  2007-02       Impact factor: 4.466

Review 5.  Understanding protein evolution: from protein physics to Darwinian selection.

Authors:  Konstantin B Zeldovich; Eugene I Shakhnovich
Journal:  Annu Rev Phys Chem       Date:  2008       Impact factor: 12.703

6.  The network of sequence flow between protein structures.

Authors:  Leonid Meyerguz; Jon Kleinberg; Ron Elber
Journal:  Proc Natl Acad Sci U S A       Date:  2007-06-27       Impact factor: 11.205

7.  Information content in organic molecules: Brownian processing at low levels.

Authors:  Daniel J Graham
Journal:  J Chem Inf Model       Date:  2007-03-09       Impact factor: 4.956

8.  Contribution of the active site histidine residues of ribonuclease A to nucleic acid binding.

Authors:  C Park; L W Schultz; R T Raines
Journal:  Biochemistry       Date:  2001-04-24       Impact factor: 3.162

9.  The total synthesis of an enzyme with ribonuclease A activity.

Authors:  B Gutte; R B Merrifield
Journal:  J Am Chem Soc       Date:  1969-01-15       Impact factor: 15.419

10.  Molecular evolution of pancreatic-type ribonucleases.

Authors:  J J Beintema; W M Fitch; A Carsana
Journal:  Mol Biol Evol       Date:  1986-05       Impact factor: 16.240

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  1 in total

1.  Net-Net Auto Machine Learning (AutoML) Prediction of Complex Ecosystems.

Authors:  Enrique Barreiro; Cristian R Munteanu; Maykel Cruz-Monteagudo; Alejandro Pazos; Humbert González-Díaz
Journal:  Sci Rep       Date:  2018-08-17       Impact factor: 4.379

  1 in total

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