Literature DB >> 19914857

Advances in engineering of fluorescent proteins and photoactivatable proteins with red emission.

Kiryl D Piatkevich1, Vladislav V Verkhusha.   

Abstract

Monomeric fluorescent proteins of different colors are widely used to study behavior and targeting of proteins in living cells. Fluorescent proteins that irreversibly change their spectral properties in response to light irradiation of a specific wavelength, or photoactivate, have become increasingly popular to image intracellular dynamics and superresolution protein localization. Until recently, however, no optimized monomeric red fluorescent proteins and red photoactivatable proteins have been available. Furthermore, monomeric fluorescent proteins, which change emission from blue to red simply with time, so-called fluorescent timers, were developed to study protein age and turnover. Understanding of chemical mechanisms of the chromophore maturation or photoactivation into a red form will further advance engineering of fluorescent timers and photoactivatable proteins with enhanced and novel properties. 2009 Elsevier Ltd. All rights reserved.

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Year:  2009        PMID: 19914857      PMCID: PMC2819558          DOI: 10.1016/j.cbpa.2009.10.011

Source DB:  PubMed          Journal:  Curr Opin Chem Biol        ISSN: 1367-5931            Impact factor:   8.822


  48 in total

1.  Fluorescent proteins from nonbioluminescent Anthozoa species.

Authors:  M V Matz; A F Fradkov; Y A Labas; A P Savitsky; A G Zaraisky; M L Markelov; S A Lukyanov
Journal:  Nat Biotechnol       Date:  1999-10       Impact factor: 54.908

Review 2.  Multiphoton microscopy in life sciences.

Authors:  K König
Journal:  J Microsc       Date:  2000-11       Impact factor: 1.758

3.  Semi-rational engineering of a coral fluorescent protein into an efficient highlighter.

Authors:  Hidekazu Tsutsui; Satoshi Karasawa; Hideaki Shimizu; Nobuyuki Nukina; Atsushi Miyawaki
Journal:  EMBO Rep       Date:  2005-03       Impact factor: 8.807

4.  EosFP, a fluorescent marker protein with UV-inducible green-to-red fluorescence conversion.

Authors:  Jörg Wiedenmann; Sergey Ivanchenko; Franz Oswald; Florian Schmitt; Carlheinz Röcker; Anya Salih; Klaus-Dieter Spindler; G Ulrich Nienhaus
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-25       Impact factor: 11.205

5.  Photoswitchable cyan fluorescent protein for protein tracking.

Authors:  Dmitriy M Chudakov; Vladislav V Verkhusha; Dmitry B Staroverov; Ekaterina A Souslova; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Nat Biotechnol       Date:  2004-10-24       Impact factor: 54.908

6.  Conversion of the monomeric red fluorescent protein into a photoactivatable probe.

Authors:  Vladislav V Verkhusha; Alexander Sorkin
Journal:  Chem Biol       Date:  2005-03

7.  Structural basis for photo-induced protein cleavage and green-to-red conversion of fluorescent protein EosFP.

Authors:  Karin Nienhaus; G Ulrich Nienhaus; Jörg Wiedenmann; Herbert Nar
Journal:  Proc Natl Acad Sci U S A       Date:  2005-06-17       Impact factor: 11.205

8.  Kindling fluorescent protein from Anemonia sulcata: dark-state structure at 1.38 A resolution.

Authors:  Michael L Quillin; David M Anstrom; Xiaokun Shu; Shannon O'Leary; Karen Kallio; Dmitry M Chudakov; S James Remington
Journal:  Biochemistry       Date:  2005-04-19       Impact factor: 3.162

9.  zFP538, a yellow-fluorescent protein from Zoanthus, contains a novel three-ring chromophore.

Authors:  S James Remington; Rebekka M Wachter; Daniel K Yarbrough; Bruce Branchaud; D C Anderson; Karen Kallio; Konstantin A Lukyanov
Journal:  Biochemistry       Date:  2005-01-11       Impact factor: 3.162

10.  Green fluorescent proteins are light-induced electron donors.

Authors:  Alexey M Bogdanov; Alexander S Mishin; Ilia V Yampolsky; Vsevolod V Belousov; Dmitriy M Chudakov; Fedor V Subach; Vladislav V Verkhusha; Sergey Lukyanov; Konstantin A Lukyanov
Journal:  Nat Chem Biol       Date:  2009-07       Impact factor: 15.040

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  29 in total

1.  Chromophore formation in DsRed occurs by a branched pathway.

Authors:  Rita L Strack; Daniel E Strongin; Laurens Mets; Benjamin S Glick; Robert J Keenan
Journal:  J Am Chem Soc       Date:  2010-06-23       Impact factor: 15.419

2.  A structural basis for reversible photoswitching of absorbance spectra in red fluorescent protein rsTagRFP.

Authors:  Sergei Pletnev; Fedor V Subach; Zbigniew Dauter; Alexander Wlodawer; Vladislav V Verkhusha
Journal:  J Mol Biol       Date:  2012-01-30       Impact factor: 5.469

Review 3.  Histochemistry: live and in color.

Authors:  Luke D Lavis
Journal:  J Histochem Cytochem       Date:  2011-02       Impact factor: 2.479

4.  Guide to red fluorescent proteins and biosensors for flow cytometry.

Authors:  Kiryl D Piatkevich; Vladislav V Verkhusha
Journal:  Methods Cell Biol       Date:  2011       Impact factor: 1.441

5.  Crystal structure of the fluorescent protein from Dendronephthya sp. in both green and photoconverted red forms.

Authors:  Nadya V Pletneva; Sergei Pletnev; Alexey A Pakhomov; Rita V Chertkova; Vladimir I Martynov; Liya Muslinkina; Zbigniew Dauter; Vladimir Z Pletnev
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-07-13       Impact factor: 7.652

Review 6.  Modern fluorescent proteins: from chromophore formation to novel intracellular applications.

Authors:  Olesya V Stepanenko; Olga V Stepanenko; Daria M Shcherbakova; Irina M Kuznetsova; Konstantin K Turoverov; Vladislav V Verkhusha
Journal:  Biotechniques       Date:  2011-11       Impact factor: 1.993

Review 7.  How can grafted breast cancer models be optimized?

Authors:  Séverine Mollard; Yoanne Mousseau; Yasser Baaj; Laurence Richard; Jeanne Cook-Moreau; Jacques Monteil; Benoît Funalot; Franck G Sturtz
Journal:  Cancer Biol Ther       Date:  2011-11-15       Impact factor: 4.742

8.  Live imaging fluorescent proteins in early mouse embryos.

Authors:  Panagiotis Xenopoulos; Sonja Nowotschin; Anna-Katerina Hadjantonakis
Journal:  Methods Enzymol       Date:  2012       Impact factor: 1.600

9.  Bright monomeric photoactivatable red fluorescent protein for two-color super-resolution sptPALM of live cells.

Authors:  Fedor V Subach; George H Patterson; Malte Renz; Jennifer Lippincott-Schwartz; Vladislav V Verkhusha
Journal:  J Am Chem Soc       Date:  2010-05-12       Impact factor: 15.419

Review 10.  Red fluorescent proteins: chromophore formation and cellular applications.

Authors:  Atsushi Miyawaki; Daria M Shcherbakova; Vladislav V Verkhusha
Journal:  Curr Opin Struct Biol       Date:  2012-09-20       Impact factor: 6.809

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