| Literature DB >> 19905480 |
Daniel K Shenfeld1, Huafeng Xu, Michael P Eastwood, Ron O Dror, David E Shaw.
Abstract
In computational thermodynamics, a sequence of intermediate states is commonly introduced to connect two equilibrium states. We consider two cases where the choice of intermediate states is particularly important: minimizing statistical error in free-energy difference calculations and maximizing average acceptance probabilities in replica-exchange simulations. We derive bounds for these quantities in terms of the thermodynamic distance between the intermediates, and show that in both cases the intermediates should be chosen as equidistant points along a geodesic connecting the end states.Mesh:
Year: 2009 PMID: 19905480 DOI: 10.1103/PhysRevE.80.046705
Source DB: PubMed Journal: Phys Rev E Stat Nonlin Soft Matter Phys ISSN: 1539-3755