Literature DB >> 19905329

Detailed scaling analysis of low-force polyelectrolyte elasticity.

D B McIntosh1, N Ribeck, O A Saleh.   

Abstract

Single-molecule force-extension data are typically compared to ideal models of polymer behavior that ignore the effects of self-avoidance. Here, we demonstrate a link between single-molecule data and the scaling pictures of a real polymer. We measure a low-force elasticity regime where the extension L of chemically denatured single-stranded DNA grows as a power law with force f : L approximately f;{gamma} , with gamma approximately 0.60-0.69 . This compares favorably with the "tensile-blob" model of a self-avoiding polymer, which predicts gamma=2/3 . We show that the transition out of the low-force regime is highly salt dependent, and use the tensile-blob model to relate this effect to the salt dependence of the polymer's Kuhn length and excluded-volume parameter. We find that, contrary to the well-known Odijk-Skolnick-Fixman theory, the Kuhn length of single-stranded DNA is linearly proportional to the Debye length of the solution. Finally, we show that the low-force elasticity becomes linear (gamma=1) at approximately 3 M salt, and interpret this as a Theta point of the polymer. At this point, the force-extension data is best described by the wormlike chain model, from which we estimate the bare (nonelectrostatic) persistence length of the polymer to be approximately 0.6 nm .

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19905329     DOI: 10.1103/PhysRevE.80.041803

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  11 in total

1.  The snakelike chain character of unstructured RNA.

Authors:  David R Jacobson; Dustin B McIntosh; Omar A Saleh
Journal:  Biophys J       Date:  2013-12-03       Impact factor: 4.033

2.  Sequence-dependent elasticity and electrostatics of single-stranded DNA: signatures of base-stacking.

Authors:  Dustin B McIntosh; Gina Duggan; Quentin Gouil; Omar A Saleh
Journal:  Biophys J       Date:  2014-02-04       Impact factor: 4.033

3.  Sequence-Dependent Three Interaction Site Model for Single- and Double-Stranded DNA.

Authors:  Debayan Chakraborty; Naoto Hori; D Thirumalai
Journal:  J Chem Theory Comput       Date:  2018-06-26       Impact factor: 6.006

4.  Quantitative high-resolution sensing of DNA hybridization using magnetic tweezers with evanescent illumination.

Authors:  Piercen M Oliver; Jin Seon Park; Dmitri Vezenov
Journal:  Nanoscale       Date:  2010-11-19       Impact factor: 7.790

5.  Is DNA a Good Model Polymer?

Authors:  Douglas R Tree; Abhiram Muralidhar; Patrick S Doyle; Kevin D Dorfman
Journal:  Macromolecules       Date:  2013-10-22       Impact factor: 5.985

6.  Direct observation of single flexible polymers using single stranded DNA().

Authors:  Christopher Brockman; Sun Ju Kim; Charles M Schroeder
Journal:  Soft Matter       Date:  2011-06-02       Impact factor: 3.679

7.  Model systems for single molecule polymer dynamics.

Authors:  Folarin Latinwo; Charles M Schroeder
Journal:  Soft Matter       Date:  2011-07-08       Impact factor: 3.679

Review 8.  DNA Mechanics and Topology.

Authors:  Sumitabha Brahmachari; John F Marko
Journal:  Adv Exp Med Biol       Date:  2018       Impact factor: 2.622

9.  Spider Silk Peptide Is a Compact, Linear Nanospring Ideal for Intracellular Tension Sensing.

Authors:  Michael D Brenner; Ruobo Zhou; Daniel E Conway; Luca Lanzano; Enrico Gratton; Martin A Schwartz; Taekjip Ha
Journal:  Nano Lett       Date:  2016-02-03       Impact factor: 11.189

10.  Elastic properties and secondary structure formation of single-stranded DNA at monovalent and divalent salt conditions.

Authors:  Alessandro Bosco; Joan Camunas-Soler; Felix Ritort
Journal:  Nucleic Acids Res       Date:  2013-11-12       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.