Literature DB >> 19905163

Optimality properties of a proposed precursor to the genetic code.

Thomas Butler1, Nigel Goldenfeld.   

Abstract

We calculate the optimality score of a doublet precursor to the canonical genetic code with respect to mitigating the effects of point mutations and compare our results to corresponding ones for the canonical genetic code. We find that the proposed precursor is much less optimal than that of the canonical code. Our results render unlikely the notion that the doublet precursor was an intermediate state in the evolution of the canonical genetic code. These findings support the notion that code optimality reflects evolutionary dynamics, and that if such a doublet code originally had a biochemical significance, it arose before the emergence of translation.

Mesh:

Year:  2009        PMID: 19905163     DOI: 10.1103/PhysRevE.80.032901

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  2 in total

1.  Frameshift and wild-type proteins are often highly similar because the genetic code and genomes were optimized for frameshift tolerance.

Authors:  Xiaolong Wang; Quanjiang Dong; Gang Chen; Jianye Zhang; Yongqiang Liu; Yujia Cai
Journal:  BMC Genomics       Date:  2022-06-02       Impact factor: 4.547

2.  Exceptional error minimization in putative primordial genetic codes.

Authors:  Artem S Novozhilov; Eugene V Koonin
Journal:  Biol Direct       Date:  2009-11-19       Impact factor: 4.540

  2 in total

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